Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_M07
(756 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 205 3e-53
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 188 5e-48
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 188 5e-48
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 148 3e-36
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 143 1e-34
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 141 4e-34
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 141 4e-34
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 141 4e-34
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 140 9e-34
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 133 1e-31
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 107 1e-23
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 105 4e-23
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 101 4e-22
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 99 2e-21
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 99 4e-21
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 91 7e-19
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 89 4e-18
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 85 5e-17
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 83 2e-16
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 83 2e-16
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 77 1e-14
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 77 2e-14
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 74 1e-13
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 73 3e-13
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 71 6e-13
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 71 1e-12
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 70 1e-12
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 69 3e-12
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 69 3e-12
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 69 3e-12
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 64 1e-10
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 62 3e-10
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 62 4e-10
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 62 5e-10
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 61 9e-10
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 61 9e-10
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 61 9e-10
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 60 1e-09
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 60 2e-09
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 60 2e-09
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 59 3e-09
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 58 5e-09
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 58 6e-09
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 58 8e-09
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 57 1e-08
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 57 1e-08
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 56 2e-08
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 54 8e-08
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 54 1e-07
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 53 2e-07
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 52 4e-07
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 52 4e-07
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 51 1e-06
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 50 2e-06
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 49 4e-06
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 48 7e-06
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 46 2e-05
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 46 3e-05
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 46 4e-05
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 45 5e-05
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 41 0.001
At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative severa... 33 0.15
At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA ... 32 0.47
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 31 1.1
At3g42725.1 68416.m04461 expressed protein 30 1.4
At2g25460.1 68415.m03049 expressed protein 30 1.4
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 29 2.5
At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly ... 28 5.8
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 28 5.8
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 28 5.8
At5g52530.2 68418.m06518 dentin sialophosphoprotein-related cont... 28 7.7
At5g52530.1 68418.m06517 dentin sialophosphoprotein-related cont... 28 7.7
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 28 7.7
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 28 7.7
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 28 7.7
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 205 bits (500), Expect = 3e-53
Identities = 92/168 (54%), Positives = 121/168 (72%)
Frame = +3
Query: 252 QNMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEE 431
++ R+ D D L PF KNFY P V + EVEEYR E+TV G ++ P++ F +
Sbjct: 46 ESPRKLDLDG--LTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRD 103
Query: 432 ANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINN 611
FPDYV + VK G+ EPTPIQ+QGWP+AM G++L+G+A+TGSGKTL+Y+LPAIVH+N
Sbjct: 104 VGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNA 163
Query: 612 QPPIRRGDGPIALVLAPTXELAQQIQQVAAXFGHTSYVRNTCVFGGAP 755
QP + GDGPI LVLAPT ELA QIQQ A+ FG +S ++ TC++GG P
Sbjct: 164 QPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVP 211
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 188 bits (457), Expect = 5e-48
Identities = 81/157 (51%), Positives = 117/157 (74%)
Frame = +3
Query: 285 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 464
+L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD + + +
Sbjct: 121 NLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAI 180
Query: 465 KTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI 644
+G+ EPTPIQAQGWP+A+ G++L+G+A+TGSGKTLAY+LPA+VH++ QP + + DGPI
Sbjct: 181 AKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPI 240
Query: 645 ALVLAPTXELAQQIQQVAAXFGHTSYVRNTCVFGGAP 755
L+LAPT ELA QIQ+ + FG S VR+TC++GGAP
Sbjct: 241 VLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAP 277
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 188 bits (457), Expect = 5e-48
Identities = 81/157 (51%), Positives = 117/157 (74%)
Frame = +3
Query: 285 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 464
+L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD + + +
Sbjct: 121 NLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAI 180
Query: 465 KTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI 644
+G+ EPTPIQAQGWP+A+ G++L+G+A+TGSGKTLAY+LPA+VH++ QP + + DGPI
Sbjct: 181 AKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPI 240
Query: 645 ALVLAPTXELAQQIQQVAAXFGHTSYVRNTCVFGGAP 755
L+LAPT ELA QIQ+ + FG S VR+TC++GGAP
Sbjct: 241 VLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAP 277
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 148 bits (359), Expect = 3e-36
Identities = 65/160 (40%), Positives = 101/160 (63%)
Frame = +3
Query: 270 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDY 449
D S+ +P NK+FY+ ++ + E +YR + + VSG +VH P++ FE+ F
Sbjct: 179 DHSSIDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQ 238
Query: 450 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRR 629
+ +K Y++PT IQ Q PI +SG++++G+A+TGSGKT A++LP IVHI +QP ++R
Sbjct: 239 IMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQR 298
Query: 630 GDGPIALVLAPTXELAQQIQQVAAXFGHTSYVRNTCVFGG 749
+GPI ++ APT ELA QI A F +R + V+GG
Sbjct: 299 DEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGG 338
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 143 bits (346), Expect = 1e-34
Identities = 66/161 (40%), Positives = 96/161 (59%)
Frame = +3
Query: 270 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDY 449
D + +PF KNFY + + + EV YR + E+ V G +V PI+++ +
Sbjct: 480 DHSKIEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSK 539
Query: 450 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRR 629
+ +K + Y++P PIQ Q PI MSG++ +GVA+TGSGKTL ++LP + HI +QPP+
Sbjct: 540 ILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEA 599
Query: 630 GDGPIALVLAPTXELAQQIQQVAAXFGHTSYVRNTCVFGGA 752
GDGPI LV+APT EL QQI F +R V+GG+
Sbjct: 600 GDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGS 640
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 141 bits (342), Expect = 4e-34
Identities = 68/146 (46%), Positives = 92/146 (63%)
Frame = +3
Query: 318 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 497
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 498 QAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTXELA 677
QAQ WPIAM G+++V +A+TGSGKTL Y++P +H+ R GP LVL+PT ELA
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELA 243
Query: 678 QQIQQVAAXFGHTSYVRNTCVFGGAP 755
QIQ+ A FG +S + TC++GGAP
Sbjct: 244 TQIQEEAVKFGRSSRISCTCLYGGAP 269
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 141 bits (342), Expect = 4e-34
Identities = 68/146 (46%), Positives = 92/146 (63%)
Frame = +3
Query: 318 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 497
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 498 QAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTXELA 677
QAQ WPIAM G+++V +A+TGSGKTL Y++P +H+ R GP LVL+PT ELA
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELA 243
Query: 678 QQIQQVAAXFGHTSYVRNTCVFGGAP 755
QIQ+ A FG +S + TC++GGAP
Sbjct: 244 TQIQEEAVKFGRSSRISCTCLYGGAP 269
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 141 bits (342), Expect = 4e-34
Identities = 68/146 (46%), Positives = 92/146 (63%)
Frame = +3
Query: 318 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 497
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 498 QAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTXELA 677
QAQ WPIAM G+++V +A+TGSGKTL Y++P +H+ R GP LVL+PT ELA
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELA 243
Query: 678 QQIQQVAAXFGHTSYVRNTCVFGGAP 755
QIQ+ A FG +S + TC++GGAP
Sbjct: 244 TQIQEEAVKFGRSSRISCTCLYGGAP 269
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 140 bits (339), Expect = 9e-34
Identities = 66/161 (40%), Positives = 95/161 (59%)
Frame = +3
Query: 270 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDY 449
D + +PF KNFY + + + V YR + E+ V G +V PIQ++ +
Sbjct: 347 DHSKIEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSK 406
Query: 450 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRR 629
+ +K + Y++P PIQAQ PI MSG++ +GVA+TGSGKTL ++LP + HI +QPP+
Sbjct: 407 ILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEA 466
Query: 630 GDGPIALVLAPTXELAQQIQQVAAXFGHTSYVRNTCVFGGA 752
GDGPI LV+APT EL QQI F + V+GG+
Sbjct: 467 GDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGS 507
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 133 bits (322), Expect = 1e-31
Identities = 68/156 (43%), Positives = 96/156 (61%), Gaps = 4/156 (2%)
Frame = +3
Query: 300 NKNFYDPH----PTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 467
NK+ PH P V SP E+ YR +HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 468 TMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 647
+ G+ PTPIQAQ WPIA+ +++V +A+TGSGKTL Y++PA + + + R +GP
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSR-NGPTV 510
Query: 648 LVLAPTXELAQQIQQVAAXFGHTSYVRNTCVFGGAP 755
L+LAPT ELA QIQ A FG +S + TC++GGAP
Sbjct: 511 LILAPTRELATQIQDEALRFGRSSRISCTCLYGGAP 546
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 107 bits (256), Expect = 1e-23
Identities = 53/136 (38%), Positives = 83/136 (61%), Gaps = 3/136 (2%)
Frame = +3
Query: 309 FYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 488
++ P V K S +++ R + +TV+G ++ PI+ F + FP + + +K G P
Sbjct: 61 WWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHP 120
Query: 489 TPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLA 659
TPIQ QG P+ +SG++++G+A TGSGKTL ++LP I+ + PI G+GPIALV+
Sbjct: 121 TPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVIC 180
Query: 660 PTXELAQQIQQVAAXF 707
P+ ELA+Q V F
Sbjct: 181 PSRELAKQTYDVVEQF 196
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 105 bits (251), Expect = 4e-23
Identities = 47/132 (35%), Positives = 80/132 (60%), Gaps = 3/132 (2%)
Frame = +3
Query: 363 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 542
+R ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + ++++
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
Query: 543 GVAQTGSGKTLAYILPAIVHINNQPPI---RRGDGPIALVLAPTXELAQQIQQVAAXFGH 713
G+A+TGSGKT A++LP + +I+ PP+ +GP A+V+APT ELAQQI++ F H
Sbjct: 355 GIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAH 414
Query: 714 TSYVRNTCVFGG 749
R T + GG
Sbjct: 415 YLGFRVTSIVGG 426
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 101 bits (243), Expect = 4e-22
Identities = 48/98 (48%), Positives = 65/98 (66%)
Frame = +3
Query: 462 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGP 641
V + G+ P+PIQAQ WPIAM +++V +A+TGSGKTL Y++P +H+ R GP
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSR-MGP 302
Query: 642 IALVLAPTXELAQQIQQVAAXFGHTSYVRNTCVFGGAP 755
LVL+PT ELA QIQ A FG +S + C++GGAP
Sbjct: 303 TILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAP 340
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 357 EEYRNKHEVTVSGVEVHNPIQYFEEANFPD 446
E Y KHE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 99 bits (238), Expect = 2e-21
Identities = 49/135 (36%), Positives = 81/135 (60%), Gaps = 3/135 (2%)
Frame = +3
Query: 312 YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 491
+ P + K S + + R + + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 492 PIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAP 662
PIQ QG P+ ++G++++G+A TGSGKTL ++LP I+ + PI G+GPI L++ P
Sbjct: 171 PIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCP 230
Query: 663 TXELAQQIQQVAAXF 707
+ ELA+Q +V F
Sbjct: 231 SRELARQTYEVVEQF 245
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 98.7 bits (235), Expect = 4e-21
Identities = 56/140 (40%), Positives = 83/140 (59%), Gaps = 6/140 (4%)
Frame = +3
Query: 351 EVEEYRNKHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 524
E E + K VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 525 SGKNLVGVAQTGSGKTLAYILPAIVHI-NNQPPIRRGD---GPIALVLAPTXELAQQIQQ 692
G++L+G+A+TGSGKTLA+ +PAI+H+ I G P LVL+PT ELA QI
Sbjct: 150 DGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISD 209
Query: 693 VAAXFGHTSYVRNTCVFGGA 752
V G +++ CV+GG+
Sbjct: 210 VLREAGEPCGLKSICVYGGS 229
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 91.1 bits (216), Expect = 7e-19
Identities = 53/175 (30%), Positives = 84/175 (48%), Gaps = 8/175 (4%)
Frame = +3
Query: 255 NMRRPDWD--SVSLQPFNKNFYDPHPTVLKRSPYEVE-EYRNKHEVTVSGVEVHNPIQYF 425
N R WD + PF + +P P ++ + + + SG V P+ F
Sbjct: 102 NNRSGGWDRREREVNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTF 161
Query: 426 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI 605
E + + + ++ Y +PTP+Q PI + G++L+ AQTGSGKT A+ P I I
Sbjct: 162 AEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGI 221
Query: 606 NNQPPIRRGDG-----PIALVLAPTXELAQQIQQVAAXFGHTSYVRNTCVFGGAP 755
++R G P+A++L+PT ELA QI A F + + V+ +GG P
Sbjct: 222 MKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTP 276
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 88.6 bits (210), Expect = 4e-18
Identities = 57/175 (32%), Positives = 82/175 (46%), Gaps = 8/175 (4%)
Frame = +3
Query: 255 NMRRPDWD--SVSLQPF-NKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYF 425
N R WD PF N DP + + E Y + + SG V P+ F
Sbjct: 90 NARSGGWDRRDTETNPFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTF 148
Query: 426 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI 605
E + + + ++ Y +PTP+Q PI +G++L+ AQTGSGKT A+ P I I
Sbjct: 149 AEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGI 208
Query: 606 NNQPPIRRGDG-----PIALVLAPTXELAQQIQQVAAXFGHTSYVRNTCVFGGAP 755
I R G P+A++L+PT ELA QI A F + + V+ +GG P
Sbjct: 209 MKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTP 263
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 85.0 bits (201), Expect = 5e-17
Identities = 49/143 (34%), Positives = 75/143 (52%), Gaps = 5/143 (3%)
Frame = +3
Query: 342 SPYEVEEYRNKHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 515
S ++ + R K ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 516 IAMSGKNLVGVAQTGSGKTLAYILPAI---VHINNQPPIRRGDGPIALVLAPTXELAQQI 686
A++GK+L+ A TGSGKT ++++P I +++ P + P+A+VLAPT EL Q+
Sbjct: 143 AALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQV 202
Query: 687 QQVAAXFGHTSYVRNTCVFGGAP 755
+ A G + V GG P
Sbjct: 203 EDQAKMLGKGLPFKTALVVGGDP 225
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 83.0 bits (196), Expect = 2e-16
Identities = 54/175 (30%), Positives = 83/175 (47%), Gaps = 8/175 (4%)
Frame = +3
Query: 255 NMRRPDWD--SVSLQPFNKNF-YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYF 425
N R WD + PF + +P T + + + Y + V SG +V P+ F
Sbjct: 95 NNRSGGWDRREREVNPFGDDAELEPVFTEQENTGINFDAYEDI-PVETSGGDVPPPVNTF 153
Query: 426 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI 605
+ + D + ++ Y PTP+Q PI ++ ++L+ AQTGSGKT A+ P I I
Sbjct: 154 ADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGI 213
Query: 606 NNQPPIRRGDG-----PIALVLAPTXELAQQIQQVAAXFGHTSYVRNTCVFGGAP 755
+ R G P A++L+PT ELA QI A F + + V+ +GG P
Sbjct: 214 MKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTP 268
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 83.0 bits (196), Expect = 2e-16
Identities = 54/175 (30%), Positives = 83/175 (47%), Gaps = 8/175 (4%)
Frame = +3
Query: 255 NMRRPDWD--SVSLQPFNKNF-YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYF 425
N R WD + PF + +P T + + + Y + V SG +V P+ F
Sbjct: 95 NNRSGGWDRREREVNPFGDDAELEPVFTEQENTGINFDAYEDI-PVETSGGDVPPPVNTF 153
Query: 426 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI 605
+ + D + ++ Y PTP+Q PI ++ ++L+ AQTGSGKT A+ P I I
Sbjct: 154 ADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGI 213
Query: 606 NNQPPIRRGDG-----PIALVLAPTXELAQQIQQVAAXFGHTSYVRNTCVFGGAP 755
+ R G P A++L+PT ELA QI A F + + V+ +GG P
Sbjct: 214 MKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTP 268
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 77.0 bits (181), Expect = 1e-14
Identities = 41/109 (37%), Positives = 64/109 (58%)
Frame = +3
Query: 423 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 602
FE N V +K GYK PTPIQ + P+ +SG ++V +A+TGSGKT A+++P +
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 603 INNQPPIRRGDGPIALVLAPTXELAQQIQQVAAXFGHTSYVRNTCVFGG 749
+ P +G G AL+L+PT +LA+Q + G + +R + + GG
Sbjct: 90 LKQHVP--QG-GVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGG 135
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 76.6 bits (180), Expect = 2e-14
Identities = 45/122 (36%), Positives = 66/122 (54%)
Frame = +3
Query: 384 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGS 563
TV GV H F E N + + +T+GYK+PTPIQA P+A++G++L A TGS
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGS 215
Query: 564 GKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTXELAQQIQQVAAXFGHTSYVRNTCVF 743
GKT A+ LP + + +P +R L+L PT ELA QI + + ++ +
Sbjct: 216 GKTAAFALPTLERLLFRP--KRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIV 273
Query: 744 GG 749
GG
Sbjct: 274 GG 275
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 73.7 bits (173), Expect = 1e-13
Identities = 40/110 (36%), Positives = 61/110 (55%), Gaps = 4/110 (3%)
Frame = +3
Query: 366 RNKHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 533
R ++ + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 534 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTXELAQQ 683
A TGSGKT A+I P ++ + DG A++L+P ELA Q
Sbjct: 180 ECFACAPTGSGKTFAFICPMLIKLKRPST----DGIRAVILSPARELAAQ 225
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 72.5 bits (170), Expect = 3e-13
Identities = 46/141 (32%), Positives = 74/141 (52%), Gaps = 5/141 (3%)
Frame = +3
Query: 342 SPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIA 521
S E ++ K ++ V VEV NP + +++ +K G + PIQA + +
Sbjct: 72 SSSEKKKSSKKVKLGVEDVEVDNP-NAVSKFRISAPLREKLKANGIEALFPIQASTFDMV 130
Query: 522 MSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRR-----GDGPIALVLAPTXELAQQI 686
+ G +LVG A+TG GKTLA++LP + + N P + G P LVL PT ELA+Q+
Sbjct: 131 LDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQV 190
Query: 687 QQVAAXFGHTSYVRNTCVFGG 749
+G + + + C++GG
Sbjct: 191 AADFDAYGGSLGLSSCCLYGG 211
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 71.3 bits (167), Expect = 6e-13
Identities = 33/82 (40%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Frame = +3
Query: 471 MGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIA 647
MG++ PT +QAQ P+ +SG++++ A TG+GKT+AY+ P I H+ + P + R G A
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFA 107
Query: 648 LVLAPTXELAQQIQQVAAXFGH 713
LV+ PT EL Q+ + H
Sbjct: 108 LVIVPTRELCLQVYETLEKLLH 129
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 70.5 bits (165), Expect = 1e-12
Identities = 41/113 (36%), Positives = 61/113 (53%), Gaps = 1/113 (0%)
Frame = +3
Query: 351 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 530
EVEE RN E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 531 KNLVGVAQTGSGKTLAYILPAIVHINNQPPI-RRGDGPIALVLAPTXELAQQI 686
K++V A+TGSGKTLAY+LP + + + + ++ P A +L P+ EL QQ+
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 70.1 bits (164), Expect = 1e-12
Identities = 39/109 (35%), Positives = 62/109 (56%)
Frame = +3
Query: 423 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 602
FE ++ + K +G ++PTP+Q P ++G++++G+AQTGSGKT A+ LP I+H
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALP-ILH 118
Query: 603 INNQPPIRRGDGPIALVLAPTXELAQQIQQVAAXFGHTSYVRNTCVFGG 749
+ P G ALV+ PT ELA Q+ + G +R + + GG
Sbjct: 119 RLAEDPY----GVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGG 163
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 68.9 bits (161), Expect = 3e-12
Identities = 44/136 (32%), Positives = 69/136 (50%)
Frame = +3
Query: 291 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 470
+P K T K EVE+ + ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 471 MGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIAL 650
MG+ T IQA+ P M G++++G A+TGSGKTLA+++PA V + + +G L
Sbjct: 172 MGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPA-VELLYRVKFTPRNGTGVL 230
Query: 651 VLAPTXELAQQIQQVA 698
V+ PT ELA Q VA
Sbjct: 231 VICPTRELAIQSYGVA 246
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 68.9 bits (161), Expect = 3e-12
Identities = 41/124 (33%), Positives = 68/124 (54%), Gaps = 7/124 (5%)
Frame = +3
Query: 399 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLA 578
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK+++G+AQTGSGKT A
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGA 62
Query: 579 YILPAIVHI-----NNQPPIRRGDGP--IALVLAPTXELAQQIQQVAAXFGHTSYVRNTC 737
+ +P + + +++P R P A VL+PT ELA QI + G +R
Sbjct: 63 FAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAV 122
Query: 738 VFGG 749
+ GG
Sbjct: 123 LVGG 126
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 68.9 bits (161), Expect = 3e-12
Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 5/118 (4%)
Frame = +3
Query: 414 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 593
++ F+E + V ++ + + PT IQ G P M K++V + TGSGKTLAY+LP
Sbjct: 111 VENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLP- 169
Query: 594 IVHINNQPPIRRGD-----GPIALVLAPTXELAQQIQQVAAXFGHTSYVRNTCVFGGA 752
IV + + G P +VL PT EL++Q+ +VA H + R+ V GG+
Sbjct: 170 IVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGS 227
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 63.7 bits (148), Expect = 1e-10
Identities = 38/104 (36%), Positives = 62/104 (59%), Gaps = 2/104 (1%)
Frame = +3
Query: 450 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH-INNQPPIR 626
+ + + + G ++ PIQ AM G++++G A+TG+GKTLA+ +P I I
Sbjct: 115 IVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHG 174
Query: 627 RGDGPIALVLAPTXELAQQIQQVAAXFGHTSYVRNT-CVFGGAP 755
RG P+ LVLAPT ELA+Q+++ F ++ +T C++GG P
Sbjct: 175 RGRNPLCLVLAPTRELARQVEK---EFRESAPSLDTICLYGGTP 215
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 62.5 bits (145), Expect = 3e-10
Identities = 39/104 (37%), Positives = 61/104 (58%), Gaps = 2/104 (1%)
Frame = +3
Query: 450 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH-INNQPPIR 626
+ + +K G ++ PIQ AM G++++G A+TG+GKTLA+ +P I I
Sbjct: 127 IVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHG 186
Query: 627 RGDGPIALVLAPTXELAQQIQQVAAXFGHTSYVRNT-CVFGGAP 755
RG P LVLAPT ELA+Q+++ F ++ +T C++GG P
Sbjct: 187 RGKNPQCLVLAPTRELARQVEK---EFRESAPSLDTICLYGGTP 227
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 62.1 bits (144), Expect = 4e-10
Identities = 36/116 (31%), Positives = 64/116 (55%), Gaps = 1/116 (0%)
Frame = +3
Query: 354 VEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 533
+E+ ++ + + G + + F+ + + +K MG++ T IQA + GK
Sbjct: 69 MEDGEDEKNIVIVGKGIMTNVT-FDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGK 127
Query: 534 NLVGVAQTGSGKTLAYILPAI-VHINNQPPIRRGDGPIALVLAPTXELAQQIQQVA 698
+++G A+TGSGKTLA+++PA+ + + R G G +V+ PT ELA Q + VA
Sbjct: 128 DVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTG--VIVICPTRELAIQTKNVA 181
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 61.7 bits (143), Expect = 5e-10
Identities = 29/90 (32%), Positives = 55/90 (61%)
Frame = +3
Query: 414 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 593
++ F + D ++G+K Y + T +Q+ P A+ G++++G A+TGSGKTLA+++P
Sbjct: 70 VRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPI 129
Query: 594 IVHINNQPPIRRGDGPIALVLAPTXELAQQ 683
+ ++ + DG ++++PT ELA Q
Sbjct: 130 LEKLHRE-RWSPEDGVGCIIISPTRELAAQ 158
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 60.9 bits (141), Expect = 9e-10
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Frame = +3
Query: 456 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD 635
+ +K G++ T +Q PI + GK+++ A+TG+GKT+A++LPAI + PP R
Sbjct: 395 KAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDS 454
Query: 636 GP---IALVLAPTXELAQQ 683
I LV+ PT ELA Q
Sbjct: 455 RQPPIIVLVVCPTRELASQ 473
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 60.9 bits (141), Expect = 9e-10
Identities = 32/109 (29%), Positives = 58/109 (53%)
Frame = +3
Query: 423 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 602
FE+ + G+ G++ P+PIQ + PIA++G++++ A+ G+GKT A+ +P +
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 603 INNQPPIRRGDGPIALVLAPTXELAQQIQQVAAXFGHTSYVRNTCVFGG 749
I+ + + A+++ PT ELA Q QV G ++ GG
Sbjct: 193 IDQDNNVIQ-----AVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGG 236
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 60.9 bits (141), Expect = 9e-10
Identities = 32/109 (29%), Positives = 58/109 (53%)
Frame = +3
Query: 423 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 602
FE+ + G+ G++ P+PIQ + PIA++G++++ A+ G+GKT A+ +P +
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 603 INNQPPIRRGDGPIALVLAPTXELAQQIQQVAAXFGHTSYVRNTCVFGG 749
I+ + + A+++ PT ELA Q QV G ++ GG
Sbjct: 193 IDQDNNVIQ-----AVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGG 236
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 60.5 bits (140), Expect = 1e-09
Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Frame = +3
Query: 423 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 602
F++ +G++ G+K T +Q P+ + GK+++ A+TG+GKT+A++LP+I
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEA 141
Query: 603 INNQPPIRRGDGP---IALVLAPTXELAQQ 683
+ PP R + I LV+ PT ELA Q
Sbjct: 142 VIKAPPASRDNRHPPIIVLVVCPTRELACQ 171
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 60.1 bits (139), Expect = 2e-09
Identities = 32/79 (40%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Frame = +3
Query: 456 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD 635
+ +K GY+ T +Q PI + GK+++ A+TG+GKT+A++LP+I + PP +
Sbjct: 67 KAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDN 126
Query: 636 --GPI-ALVLAPTXELAQQ 683
PI ALV+ PT ELA Q
Sbjct: 127 KRPPILALVICPTRELANQ 145
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 59.7 bits (138), Expect = 2e-09
Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Frame = +3
Query: 504 QGWPIAMSGKNLVGVAQTGSGKTLAYILPAI---VHINNQPPIRRGDGPIALVLAPTXEL 674
Q P A++GK+L+ A TGSGKT ++++P I +++ P + P+A+VLAPT EL
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTREL 61
Query: 675 AQQIQQVAAXFGHTSYVRNTCVFGGAP 755
Q++ A G + V GG P
Sbjct: 62 CVQVEDQAKMLGKGLPFKTALVVGGDP 88
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 59.3 bits (137), Expect = 3e-09
Identities = 38/96 (39%), Positives = 57/96 (59%), Gaps = 4/96 (4%)
Frame = +3
Query: 474 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPI 644
G++ TP+QA+ P S K++V A TGSGKTLA++LP I I N+ PP + +
Sbjct: 35 GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVM 92
Query: 645 ALVLAPTXELAQQIQQVAAXFGHT-SYVRNTCVFGG 749
++++PT EL+ QI +VA F T V + + GG
Sbjct: 93 GVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGG 128
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 58.4 bits (135), Expect = 5e-09
Identities = 37/115 (32%), Positives = 64/115 (55%), Gaps = 3/115 (2%)
Frame = +3
Query: 411 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT--LAYI 584
PI+ F++ D V +GV GYK+P+ IQ + + G++++ AQ+G+GKT +A
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAIS 79
Query: 585 LPAIVHINNQPPIRRGDGPIALVLAPTXELAQQIQQVAAXFG-HTSYVRNTCVFG 746
+ IV+I+++ LVL+P+ ELA Q ++ G HT+ + C+ G
Sbjct: 80 VCQIVNISSRK-------VQVLVLSPSRELASQTEKTIQAIGAHTNIQAHACIGG 127
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 58.0 bits (134), Expect = 6e-09
Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 5/110 (4%)
Frame = +3
Query: 435 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQ 614
+ P +++ ++ G PIQ A+ G++++ A+TG+GKTLA+ +P I + +
Sbjct: 108 SLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEE 167
Query: 615 ----PPIRR-GDGPIALVLAPTXELAQQIQQVAAXFGHTSYVRNTCVFGG 749
RR G P LVLAPT ELA+Q+++ Y+ CV+GG
Sbjct: 168 AGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKE--SAPYLSTVCVYGG 215
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 57.6 bits (133), Expect = 8e-09
Identities = 30/91 (32%), Positives = 55/91 (60%)
Frame = +3
Query: 423 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 602
FE+ + +G+ G+++P+PIQ + PIA++G +++ A+ G+GKT A+ +P +
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK 215
Query: 603 INNQPPIRRGDGPIALVLAPTXELAQQIQQV 695
I+ + + + A++L PT ELA Q QV
Sbjct: 216 IDPENNVIQ-----AVILVPTRELALQTSQV 241
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 57.2 bits (132), Expect = 1e-08
Identities = 30/91 (32%), Positives = 54/91 (59%)
Frame = +3
Query: 423 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 602
FE+ + +G+ G+++P+PIQ + PIA++G +++ A+ G+GKT A+ +P +
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 603 INNQPPIRRGDGPIALVLAPTXELAQQIQQV 695
I+ + + A++L PT ELA Q QV
Sbjct: 186 IDPNNNVIQ-----AMILVPTRELALQTSQV 211
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 57.2 bits (132), Expect = 1e-08
Identities = 30/91 (32%), Positives = 54/91 (59%)
Frame = +3
Query: 423 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 602
FE+ + +G+ G+++P+PIQ + PIA++G +++ A+ G+GKT A+ +P +
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 603 INNQPPIRRGDGPIALVLAPTXELAQQIQQV 695
I+ + + A++L PT ELA Q QV
Sbjct: 186 IDPNNNVIQ-----AMILVPTRELALQTSQV 211
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 56.4 bits (130), Expect = 2e-08
Identities = 33/78 (42%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Frame = +3
Query: 474 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPI 644
G++ TP+QA+ P S K++V A TGSGKTLA++LP I I N+ PP + +
Sbjct: 36 GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVM 93
Query: 645 ALVLAPTXELAQQIQQVA 698
++++PT EL+ QI +VA
Sbjct: 94 GVIISPTRELSAQIHKVA 111
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 54.4 bits (125), Expect = 8e-08
Identities = 30/86 (34%), Positives = 48/86 (55%)
Frame = +3
Query: 441 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPP 620
P+++ ++ +G+ PT IQ + P +G++ + AQTGSGKTL Y+L IN Q
Sbjct: 84 PEHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQ-- 141
Query: 621 IRRGDGPIALVLAPTXELAQQIQQVA 698
A+++ PT EL Q+ +VA
Sbjct: 142 ---RSSVQAVIVVPTRELGMQVTKVA 164
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 54.0 bits (124), Expect = 1e-07
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Frame = +3
Query: 423 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 602
F E + + + +K + P IQA + + GK+ + Q+GSGKTLAY++P I
Sbjct: 376 FAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQR 435
Query: 603 INN---QPPIRRGDG-PIALVLAPTXELAQQI 686
+ Q + G P +VL PT ELA Q+
Sbjct: 436 LREEELQGHSKSSPGCPRVIVLVPTAELASQV 467
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 52.8 bits (121), Expect = 2e-07
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Frame = +3
Query: 423 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 602
FEE PD + ++ G+ PT +Q+ P + G + V + TGSGKTLAY+LP +
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSE 171
Query: 603 INNQPPIRRGDGP--------IALVLAPTXELAQQI 686
I R A+++AP+ EL QI
Sbjct: 172 IGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQI 207
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 52.0 bits (119), Expect = 4e-07
Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Frame = +3
Query: 351 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT-MGYKEPTPIQAQGWPIAMS 527
E E N VT SG + FE+ N + +G+ M +++P+ IQA P+ M+
Sbjct: 70 EEPEDSNIKAVT-SGDTPYTSASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMT 128
Query: 528 G--KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTXELAQQIQQVAA 701
K+L+ A GSGKT ++L + ++ P +R P AL + PT ELA Q +V
Sbjct: 129 PPHKHLIAQAHNGSGKTTCFVLGMLSRVD--PTLRE---PQALCICPTRELANQNMEVLQ 183
Query: 702 XFG 710
G
Sbjct: 184 KMG 186
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 52.0 bits (119), Expect = 4e-07
Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 1/124 (0%)
Frame = +3
Query: 384 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGS 563
T G+E PI F + + V +GV G+++P+ IQ + + G++++ AQ+G+
Sbjct: 27 TTDGIE---PITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGT 83
Query: 564 GKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTXELAQQIQQVAAXFG-HTSYVRNTCV 740
GKT L ++ + AL+L+PT ELA Q ++ G H + + C+
Sbjct: 84 GKTSMIALSVCQVVDTSSREVQ-----ALILSPTRELATQTEKTIQAIGLHANIQAHACI 138
Query: 741 FGGA 752
G +
Sbjct: 139 GGNS 142
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 50.8 bits (116), Expect = 1e-06
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 4/91 (4%)
Frame = +3
Query: 489 TPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQ---PPIRRGDGPIALVLA 659
TP+QA P+ S K++ A TGSGKTLA+++P + + PP + + ++++
Sbjct: 40 TPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPP--KPHQVMGVIIS 97
Query: 660 PTXELAQQIQQVAAXFGHT-SYVRNTCVFGG 749
PT EL+ QI VA F T + V + + GG
Sbjct: 98 PTRELSTQIYNVAQPFVSTLANVNSVLLVGG 128
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 50.0 bits (114), Expect = 2e-06
Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 1/117 (0%)
Frame = +3
Query: 399 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLA 578
EVH + F+ + + +G+ G+++P+ IQ +G G +++ AQ+G+GKT
Sbjct: 36 EVH---ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTAT 92
Query: 579 YILPAIVHINNQPPIRRGDGPIALVLAPTXELAQQIQQVAAXFGHTSYVR-NTCVFG 746
+ + ++ + ALVLAPT ELAQQI++V G V+ + CV G
Sbjct: 93 FCSGVLQQLDYALLQCQ-----ALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGG 144
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 48.8 bits (111), Expect = 4e-06
Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 1/131 (0%)
Frame = +3
Query: 357 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 536
E + E S +VH + F+ + + +G+ G+++P+ IQ +G G +
Sbjct: 22 EVLEGQDEFFTSYDDVH---ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLD 78
Query: 537 LVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTXELAQQIQQVAAXFGHT 716
++ AQ+G+GKT + + ++ + ALVLAPT ELAQQI++V G
Sbjct: 79 VIQQAQSGTGKTATFCSGVLQQLDFSLIQCQ-----ALVLAPTRELAQQIEKVMRALGDY 133
Query: 717 SYVR-NTCVFG 746
V+ + CV G
Sbjct: 134 LGVKVHACVGG 144
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 48.0 bits (109), Expect = 7e-06
Identities = 33/103 (32%), Positives = 54/103 (52%)
Frame = +3
Query: 441 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPP 620
PD ++ G+ G+++P+ IQ +G G +++ AQ+G+GKT + + ++
Sbjct: 50 PDLLR-GIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDISLV 108
Query: 621 IRRGDGPIALVLAPTXELAQQIQQVAAXFGHTSYVRNTCVFGG 749
+ ALVLAPT ELAQQI++V G V+ GG
Sbjct: 109 QCQ-----ALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGG 146
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 46.4 bits (105), Expect = 2e-05
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 16/116 (13%)
Frame = +3
Query: 450 VQQGVKTMGYKEPTPIQAQGWPIAM-SGKNLVGVAQTGSGKTLAYILPAIVHI------- 605
+ + + + +KEPT IQ + +A GK+++G A+TGSGKTLA+ LP + +
Sbjct: 201 LMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKV 260
Query: 606 -------NNQPPIRRGDGPI-ALVLAPTXELAQQIQQVAAXFGHTSYVRNTCVFGG 749
+ DG + AL++ PT ELA Q+ + V+ + GG
Sbjct: 261 GKLYALKGEEAQKYAADGYLRALIITPTRELALQVTEHLENAAKNLSVKVVPIVGG 316
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 46.0 bits (104), Expect = 3e-05
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Frame = +3
Query: 423 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 602
F+E+ + + G + T +Q + GK+ + A+TG+GK++A++LPAI
Sbjct: 330 FDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 389
Query: 603 I----NNQPPIRRGDGPIALVLAPTXELAQQI 686
+ N+ + + AL+L PT ELA QI
Sbjct: 390 VLKAMNSGKGVNKVAPIFALILCPTRELASQI 421
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 45.6 bits (103), Expect = 4e-05
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Frame = +3
Query: 444 DYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINN---- 611
D V ++ G+ P+ QA P +SGK+++ A+TGSGKT Y+ P I + N
Sbjct: 89 DNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALD 148
Query: 612 QPPIRRGDGP-----IALVLAPTXELAQQI 686
R + P I+L+L P L +Q+
Sbjct: 149 SEVTNREERPFPLKNISLILCPNVMLCEQV 178
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 45.2 bits (102), Expect = 5e-05
Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 10/139 (7%)
Frame = +3
Query: 300 NKNFYDPH---PTVLKRSPYEVEEYRNKHEVTVSGVEVHNPI---QYFEEANFPDYVQQG 461
N+N D P + R ++ + ++ V E H+ I + F+E+ +
Sbjct: 330 NRNVTDEELYPPLDINRVREDLSKKQSVDNVMEEKQEPHDSIYSAKRFDESCISPLTLKA 389
Query: 462 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI----NNQPPIRR 629
+ G + T +Q + GK+ + A+TG+GK++A++LPAI + N+ + +
Sbjct: 390 LSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHK 449
Query: 630 GDGPIALVLAPTXELAQQI 686
L+L PT ELA QI
Sbjct: 450 VAPIFVLILCPTRELASQI 468
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 40.7 bits (91), Expect = 0.001
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Frame = +3
Query: 450 VQQGVKTMGYKEPTPIQAQGW--PIAMSG--KNLVGVAQTGSGKTLAYILPAIVHINNQP 617
+++ ++ MG P+Q W I G +++ + TGSGKTL+Y LP IV +
Sbjct: 32 LKKALENMGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALP-IVQLLASR 90
Query: 618 PIRRGDGPIALVLAPTXELAQQIQQV 695
P+R ALV+ PT +LA Q++ V
Sbjct: 91 PVR---CLRALVVLPTRDLALQVKDV 113
>At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative several
putative ATP-dependent helicases
Length = 1058
Score = 33.5 bits (73), Expect = 0.15
Identities = 23/76 (30%), Positives = 34/76 (44%)
Frame = +3
Query: 453 QQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRG 632
+ +K +G QA+ A++GKN+ T SGK+L Y +P + +
Sbjct: 383 KSALKRIGLNTLYSHQAEAISAALAGKNVAVATMTSSGKSLCYNVPVF------EELCKD 436
Query: 633 DGPIALVLAPTXELAQ 680
AL L PT LAQ
Sbjct: 437 TNSCALYLFPTKALAQ 452
>At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA
Helicase [Arabidopsis thaliana] GI:10944747
Length = 606
Score = 31.9 bits (69), Expect = 0.47
Identities = 23/74 (31%), Positives = 31/74 (41%)
Frame = +3
Query: 372 KHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVA 551
K V +S + P Y E D + G K P+Q Q +M K+ +
Sbjct: 170 KPSVQISNKDHETP-SYEELQALDDLEFANLVIFGNKVFRPLQHQACRASMERKDCFVLM 228
Query: 552 QTGSGKTLAYILPA 593
TG GK+L Y LPA
Sbjct: 229 PTGGGKSLCYQLPA 242
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 465 KTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIV 599
K G P Q + MSG ++ + TG GK+L Y LPA++
Sbjct: 447 KVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALI 491
>At3g42725.1 68416.m04461 expressed protein
Length = 202
Score = 30.3 bits (65), Expect = 1.4
Identities = 22/68 (32%), Positives = 37/68 (54%)
Frame = +1
Query: 178 LGLATVAIDLEDLEALVGKKNSLEGRTCDAQIGILFHSNLSTKTFMIHILQFSKDHHMKS 357
LGLA +A+ L L + G +S + R+C I H + T F+ ++ FS++ +S
Sbjct: 44 LGLAFLAVSLVSLISSFGSASSHQSRSCFI-ARITLHVSSLTGQFIAVLMLFSRE--KQS 100
Query: 358 KSIEINTR 381
S+ I+TR
Sbjct: 101 LSLLISTR 108
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -1
Query: 231 SHQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGYY 115
+H S + + + + + E + R+CC++ WN F+ +Y
Sbjct: 63 NHTSSKPIALGSNHVEWEEEFERVCCIVGPWNLSFNVFY 101
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 474 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIV 599
GY Q Q + + G + + V TG+GK+L Y +PA++
Sbjct: 266 GYDSFRDGQLQAIKMILGGSSTMLVLPTGAGKSLCYQIPAMI 307
>At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly
identical to DNA Helicase [Arabidopsis thaliana]
GI:11121445
Length = 705
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +3
Query: 522 MSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTXELAQQIQQVAA 701
M+G++++ + G GK+L Y LPA++ G LV++P L Q A
Sbjct: 102 MTGRDVLVIMAAGGGKSLCYQLPAMLR-----------GGTTLVVSPLLSLIQDQVMGLA 150
Query: 702 XFGHTSYV 725
G ++Y+
Sbjct: 151 ALGISAYM 158
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +3
Query: 303 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 458
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 161 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 211
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +3
Query: 303 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 458
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 237 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 287
>At5g52530.2 68418.m06518 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Dentin matrix protein-3) (DMP- 3)
(Swiss-Prot:P97399) [Mus musculus]
Length = 828
Score = 27.9 bits (59), Expect = 7.7
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Frame = +3
Query: 255 NMRRPDWDSVSLQPF--NKNFYDPHPTVLKRSPYEVEEYR--NKHEVTVSGVEVHNPIQY 422
+MRRP+ D+ +L+PF N+ F +P + + +E+ + R + E T G +V ++
Sbjct: 752 SMRRPNSDNNNLRPFIPNRRFDNPEEST-GGNRFEMTQQRRTRRSETTEDGGDVIRRFKF 810
Query: 423 FEE 431
EE
Sbjct: 811 NEE 813
>At5g52530.1 68418.m06517 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Dentin matrix protein-3) (DMP- 3)
(Swiss-Prot:P97399) [Mus musculus]
Length = 828
Score = 27.9 bits (59), Expect = 7.7
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Frame = +3
Query: 255 NMRRPDWDSVSLQPF--NKNFYDPHPTVLKRSPYEVEEYR--NKHEVTVSGVEVHNPIQY 422
+MRRP+ D+ +L+PF N+ F +P + + +E+ + R + E T G +V ++
Sbjct: 752 SMRRPNSDNNNLRPFIPNRRFDNPEEST-GGNRFEMTQQRRTRRSETTEDGGDVIRRFKF 810
Query: 423 FEE 431
EE
Sbjct: 811 NEE 813
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 312 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 488
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 489 TPIQAQGWPIAMS 527
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 312 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 488
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 489 TPIQAQGWPIAMS 527
+P++ + P+ S
Sbjct: 255 SPVRDEYAPVIFS 267
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 312 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 488
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 489 TPIQAQGWPIAMS 527
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,552,345
Number of Sequences: 28952
Number of extensions: 324968
Number of successful extensions: 982
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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