Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_M06
(843 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0075 + 3916373-3916400,3916760-3916858,3916943-3917116,391... 200 1e-51
01_01_0071 + 548255-548399,548478-548651,548787-548892,548992-54... 191 5e-49
02_05_1230 - 35099942-35100018,35100138-35100221,35100367-351004... 87 2e-17
10_08_0258 + 16261454-16261540,16261636-16261712,16262734-162628... 83 3e-16
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 30 2.7
02_01_0725 - 5422477-5422641,5422721-5422792,5422876-5422958,542... 30 2.7
04_04_0792 - 28091597-28091675,28091853-28091908,28092151-280922... 29 6.1
12_02_0279 - 16704284-16704925 28 8.1
03_06_0064 + 31395168-31395223,31396906-31397368,31397440-313975... 28 8.1
>09_02_0075 +
3916373-3916400,3916760-3916858,3916943-3917116,
3917207-3917312,3917671-3917809,3918457-3918534,
3918863-3918928,3919213-3919298,3919939-3920038,
3920245-3920355,3920457-3920498,3920671-3920757,
3921013-3921102
Length = 401
Score = 200 bits (487), Expect = 1e-51
Identities = 106/242 (43%), Positives = 142/242 (58%), Gaps = 3/242 (1%)
Frame = +1
Query: 112 STKVSLNEVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYIGN 291
S + +V + RTPM + AA++RA + ++EV+ GN
Sbjct: 3 SDNIGSRDVCVVGVARTPMGGFLGALSSLSATKLGSIAIEAALKRANVDPALVQEVFFGN 62
Query: 292 VCSANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGM 471
V SANLGQAPARQA + AG+P + +C+ VNKVCASGMK+ M AAQ + G DI++AGGM
Sbjct: 63 VLSANLGQAPARQAALGAGIPNTVVCSAVNKVCASGMKATMFAAQSILLGINDIVVAGGM 122
Query: 472 ESMSNVPFYL--KRGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITRQDQ 645
ESMSN P Y+ R + +G LVDG++ DGL DVY F MGNCAE A +TR+DQ
Sbjct: 123 ESMSNAPKYIAEARKGSRFGHDTLVDGMLKDGLWDVYGDFAMGNCAELCADNHALTREDQ 182
Query: 646 DEYAVNSYKRSAAAYEAKAFVDELVPVPVPQKRG-APVIFAEXEXYKRVNFEKFTKLSTV 822
D YA+ S +R AA + AF E+VP+ VP RG PV+ + E + + K KL
Sbjct: 183 DAYAIQSNERGIAARNSGAFAWEIVPIEVPVGRGKPPVLVDKDEGLDKFDPVKLKKLRPS 242
Query: 823 FQ 828
F+
Sbjct: 243 FK 244
>01_01_0071 +
548255-548399,548478-548651,548787-548892,548992-549130,
549216-549293,549395-549460,550061-550201,550417-550527,
550614-550655,550739-550825,551033-551118,551681-551684
Length = 392
Score = 191 bits (466), Expect = 5e-49
Identities = 97/216 (44%), Positives = 135/216 (62%), Gaps = 2/216 (0%)
Frame = +1
Query: 133 EVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYIGNVCSANLG 312
+V I RTP+ + AA+ RA + ++EV++GNV SANLG
Sbjct: 16 DVCIVGVARTPIGALLGSLSSLPATKLGSVAIQAALRRANVEPALVQEVFMGNVLSANLG 75
Query: 313 QAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSNVP 492
QAPARQA + AGLP + CTTVNKVC+SGMK++MLAAQ +Q G D+++AGGMESMSN P
Sbjct: 76 QAPARQAALGAGLPDTVPCTTVNKVCSSGMKAVMLAAQTIQLGMHDVVVAGGMESMSNAP 135
Query: 493 FYL--KRGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITRQDQDEYAVNS 666
Y+ R + +G L+DG++ DGL DVYN F MG CAE A + I+R++QD YA+ S
Sbjct: 136 KYVAAARRGSRFGHDVLIDGMLKDGLWDVYNDFPMGMCAELCADQHSISREEQDLYAIQS 195
Query: 667 YKRSAAAYEAKAFVDELVPVPVPQKRGAPVIFAEXE 774
+R+ AA ++ F E+ PV + RG P + + +
Sbjct: 196 NERAIAARDSGTFSWEIAPVEISSGRGKPPLIVDKD 231
>02_05_1230 -
35099942-35100018,35100138-35100221,35100367-35100475,
35100564-35100687,35101157-35101253,35101375-35101507,
35101654-35101731,35101821-35101928,35102011-35102078,
35102181-35102279,35102379-35102505,35102623-35102707,
35103297-35103373,35103482-35103562
Length = 448
Score = 86.6 bits (205), Expect = 2e-17
Identities = 60/203 (29%), Positives = 98/203 (48%), Gaps = 3/203 (1%)
Frame = +1
Query: 130 NEVVIASAVRTPMXXXXXXXXXXXXXXXXXXXV-NAAIERAGIPKEEIKEVYIGNVCSAN 306
++VV+ +A RTP+ V A ++ I EI ++ +G V
Sbjct: 47 DDVVVVAAYRTPICKAKRGGFKDTYPEDLLTVVLKAVLDNTKINPGEIGDIVVGTVLGPG 106
Query: 307 LGQA-PARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMS 483
+A R A +AG+P++ TVN+ C+SG++++ A ++ G DI + G+ESMS
Sbjct: 107 SQRAIECRAAAFYAGVPENVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMS 166
Query: 484 -NVPFYLKRGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITRQDQDEYAV 660
N + + +Q + MG +EN A + +TRQ+QD+ A
Sbjct: 167 VNAMGWEGQVNPKVNEVQKAQDCLLP----------MGITSENVAHRYGVTRQEQDQAAA 216
Query: 661 NSYKRSAAAYEAKAFVDELVPVP 729
S++R+AAA A F DE+VPVP
Sbjct: 217 ESHRRAAAATAAGKFKDEIVPVP 239
>10_08_0258 +
16261454-16261540,16261636-16261712,16262734-16262818,
16262931-16263057,16263147-16263245,16263343-16263410,
16263514-16263621,16263727-16263804,16263921-16264053,
16264138-16264234,16264465-16264588,16264668-16264776,
16264899-16264982,16265071-16265180
Length = 461
Score = 83.0 bits (196), Expect = 3e-16
Identities = 58/201 (28%), Positives = 97/201 (48%), Gaps = 2/201 (0%)
Frame = +1
Query: 130 NEVVIASAVRTPMXXXXXXXXXXXXXXXXXXXV-NAAIERAGIPKEEIKEVYIGNVCSAN 306
++VVI +A RT + V A I++ + E+ ++ +G V +
Sbjct: 49 DDVVIVAAYRTAICKSKRGGFKDTPAEDLLVPVFKALIDKTKLNPSEVGDIVVGTVLAPG 108
Query: 307 LGQA-PARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMS 483
+A R A +AG P + TVN+ C+SG++++ A ++ G DI +A G+ESM+
Sbjct: 109 SQRAIECRMAAFYAGFPDTVPLMTVNRQCSSGLQAVANVASNIKAGLYDIGIAAGLESMT 168
Query: 484 NVPFYLKRGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITRQDQDEYAVN 663
+ G +F D MG +EN AK+ ITR +QD+ AV
Sbjct: 169 -------VNQVRLDGQVNPKVELFSQARDCL--LPMGLTSENVAKRFGITRMEQDQAAVE 219
Query: 664 SYKRSAAAYEAKAFVDELVPV 726
S++++AAA + F +E+VPV
Sbjct: 220 SHRKAAAAAASGKFKEEIVPV 240
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 29.9 bits (64), Expect = 2.7
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +3
Query: 285 WQCLFCKFGPSTCKTSCNICRFAKKYHMY 371
WQC C+ G K SC C + + +Y
Sbjct: 43 WQCTICEHGNDAKKKSCEQCGVLRYFSLY 71
>02_01_0725 -
5422477-5422641,5422721-5422792,5422876-5422958,
5423113-5423173,5423305-5423381,5423456-5423522,
5423770-5423803,5423894-5423974,5424285-5424436,
5424529-5424615,5425019-5425126,5425906-5426259
Length = 446
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1
Query: 388 CASGMKSIMLAAQGLQTGAQDIILAGGMES 477
CA+G SI A + +Q G D+++AGG ES
Sbjct: 193 CATGAHSIGDATRMIQFGDADVMVAGGTES 222
>04_04_0792 -
28091597-28091675,28091853-28091908,28092151-28092211,
28092290-28092363,28092865-28092945,28093127-28093201,
28093276-28093395,28093486-28093566,28093644-28093712,
28094057-28094128,28094220-28094362,28094452-28094566,
28094651-28094774,28095124-28095476,28096035-28096374,
28096914-28097124,28097209-28097482,28097570-28097788,
28097868-28098004,28098117-28098375
Length = 980
Score = 28.7 bits (61), Expect = 6.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 441 SPRYNTCWWDGIYVKCTFLF 500
S Y+ CWW + V+C F F
Sbjct: 470 SDLYDRCWWPPVCVRCIFRF 489
>12_02_0279 - 16704284-16704925
Length = 213
Score = 28.3 bits (60), Expect = 8.1
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3
Query: 360 YHMYNCKQSMCLWH 401
YH Y CK MCLWH
Sbjct: 201 YHKY-CKSRMCLWH 213
>03_06_0064 +
31395168-31395223,31396906-31397368,31397440-31397598,
31397686-31397751,31397856-31397935,31397991-31398099
Length = 310
Score = 28.3 bits (60), Expect = 8.1
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +3
Query: 399 HEIYNVGSTRSTNWSPRYNTCWW 467
H + +G+ S +W P TC+W
Sbjct: 65 HALGGIGACSSVHWQPDRGTCYW 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,662,465
Number of Sequences: 37544
Number of extensions: 387430
Number of successful extensions: 1054
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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