Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_M03
(771 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 195 5e-51
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po... 37 0.004
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 30 0.42
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 28 1.3
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar... 26 5.2
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 26 6.9
SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomy... 25 9.1
SPBC1718.05 |trs31||TRAPP complex subunit Trs31 |Schizosaccharom... 25 9.1
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 25 9.1
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni... 25 9.1
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 195 bits (476), Expect = 5e-51
Identities = 91/201 (45%), Positives = 126/201 (62%), Gaps = 1/201 (0%)
Frame = +2
Query: 170 TLPEIFKYVDQNKDSYKQLLKEAVAIPSVSCDVKYRADCIRMVHWMQDKLKEVGATTELR 349
+L ++++ +D+ KD + L AV+IPSVS DV R + M ++ + ++GA E R
Sbjct: 2 SLDKLYEVIDKKKDEFVTRLSRAVSIPSVSADVTLRPKVVEMADFVVSEFTKLGAKMEKR 61
Query: 350 DVGFQTIDGKDVQXXXXXXXXXXNDPKKNTVCIYGHLDVQPALKSDGWETEPFEL-VERN 526
D+G+ +DG+DV NDP K TV IY H DVQPA DGW T+PF L V+
Sbjct: 62 DIGYHQMDGQDVPLPPIVLGQYGNDPSKKTVLIYNHFDVQPASLEDGWSTDPFTLTVDNK 121
Query: 527 EKLYGRGSTDDKGPVLGWLHTINAYKGTGAELPVNLKFIFECMEESGSEGLDSLLMDKLK 706
+++GRG+TDDKGP++GW+ I A+K G + PVNL FE MEE GSEGL+ L+ + +
Sbjct: 122 GRMFGRGATDDKGPLIGWISAIEAHKELGIDFPVNLLMCFEGMEEYGSEGLEDLI--RAE 179
Query: 707 PEGFFDSVDYVCISDNYWLGT 769
E +F D VCISD YWLGT
Sbjct: 180 AEKYFAKADCVCISDTYWLGT 200
>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 596
Score = 36.7 bits (81), Expect = 0.004
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 446 IYGHLDVQPALKS--DGWETEPFELVERNEKLYGRGSTDDKGPVLGWLHTI 592
+ GH DV P ++ D W PF N +Y RG+ DDK V+ L +
Sbjct: 194 LMGHQDVVPVNQASLDRWYFPPFSATYHNGHVYSRGAADDKNSVVAILEAL 244
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 29.9 bits (64), Expect = 0.42
Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 3/120 (2%)
Frame = -1
Query: 582 SQPSTGPLSSVEPRPYNFSLRSTSSKGSVSHPSDFKAGCTSK*P*IQTVFFFGSLPNTPT 403
S ST SS+ + S+SS S S + +S + S ++PT
Sbjct: 225 SSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPT 284
Query: 402 KTGGS*TSLPSIV*KPTSLNSVVAPTSFNLSCIQ*TI---RMQSARYFTSHETDGMATAS 232
T + +S S PTS +S ++ +S + S T+ M S+ F+S T +T S
Sbjct: 285 STSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTIS 344
>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1136
Score = 28.3 bits (60), Expect = 1.3
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Frame = +2
Query: 32 INRATCIFNTLIKLPATKQLVPFFPAYHQHYSVSSKQVSAKMATE-KTLPEIFKYVDQNK 208
++ C NT+ L + + FF A + S Q+S AT +L IF D
Sbjct: 750 VDSTNCNLNTMEALASVNTALQFFSALNYSECFSESQISPLHATVISSLSAIFIRDDTEN 809
Query: 209 DSYKQLLKEAVAIPSVSCDVKYRADCIRMVHWM 307
D +L+++ +Y A C++++ W+
Sbjct: 810 DLVTELVEKLFLFK------QYNA-CMQLIGWL 835
>SPBC19C7.08c |||leucine carboxyl
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 681
Score = 26.2 bits (55), Expect = 5.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 473 QVVHPNDHRYKLYFFLDHYPIR 408
++V P D + YFFL HY I+
Sbjct: 295 EMVEPFDEWEEFYFFLQHYSIQ 316
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 25.8 bits (54), Expect = 6.9
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +2
Query: 563 GPVLGWL-HTINAYKGTGAELPVNLKFIFECMEES 664
GP L ++ TIN Y+GTG L +LK + + E+S
Sbjct: 401 GPYLVFMASTINGYEGTGRSL--SLKLLQQLREQS 433
>SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 482
Score = 25.4 bits (53), Expect = 9.1
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -2
Query: 479 SKQVVHPNDHRYKLYFFLDHYPIRLLKLAAVERL-CHLLFESQH 351
SK+ VHPNDH D +P ++ +A+V ++ HLL +H
Sbjct: 141 SKKPVHPNDHVNMSQSSNDTFP-TVMHIASVLQIHTHLLPAMKH 183
>SPBC1718.05 |trs31||TRAPP complex subunit Trs31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 209
Score = 25.4 bits (53), Expect = 9.1
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -2
Query: 548 NLVHIIFHCAQLVQKVQSPIHQISKQVVHPNDHRYKL 438
NL F ++L+Q++QS + I + N+H Y++
Sbjct: 42 NLSSFAFIFSELIQRIQSQVSGIQEFEEKLNEHGYRV 78
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 25.4 bits (53), Expect = 9.1
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = -2
Query: 518 QLVQKVQSPIHQISKQVVHPNDHRYKLYFFLDHYPIRLLKLAA 390
++VQK S +H+++K++ H +L F Y + LL++ A
Sbjct: 538 EIVQKSLSVLHKVTKKIDKKAQHLQQLNAFQLLYSLVLLQVYA 580
>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 9.1
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +2
Query: 425 PKKNTVCIYGHLDVQPALKSDGWETEPFELVERNEKL 535
P + I DV+P LKS + P E R EKL
Sbjct: 311 PLLEFIAIMDIKDVRPVLKSYQGKNIPLEYARREEKL 347
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,345,855
Number of Sequences: 5004
Number of extensions: 71785
Number of successful extensions: 212
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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