Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_M03
(771 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_9197| Best HMM Match : ITAM (HMM E-Value=4.2) 42 6e-04
SB_59218| Best HMM Match : M20_dimer (HMM E-Value=2) 36 0.048
SB_39672| Best HMM Match : Peptidase_M20 (HMM E-Value=9.9e-09) 36 0.048
SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.34
SB_53291| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_56221| Best HMM Match : AOX (HMM E-Value=3.6) 29 4.2
SB_42534| Best HMM Match : DUF699 (HMM E-Value=0) 28 9.6
SB_26826| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_6120| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
>SB_9197| Best HMM Match : ITAM (HMM E-Value=4.2)
Length = 75
Score = 41.9 bits (94), Expect = 6e-04
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +2
Query: 431 KNTVCIYGHLDVQPALKSDGWET--EPFELVERNEKLYGRGSTDDKGPVLGWLHTINAYK 604
++TV +YGHLD QP + GW P+ + KLYGRG DD V L I A +
Sbjct: 15 RDTVLLYGHLDKQP--EFSGWRAGLGPWTPKYEDGKLYGRGGADDGYAVYASLTAIMALE 72
Query: 605 G 607
G
Sbjct: 73 G 73
>SB_59218| Best HMM Match : M20_dimer (HMM E-Value=2)
Length = 233
Score = 35.5 bits (78), Expect = 0.048
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +2
Query: 728 VDYVCISDNYWLG 766
VDYVCISDNYWLG
Sbjct: 137 VDYVCISDNYWLG 149
Score = 32.3 bits (70), Expect = 0.45
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 15/105 (14%)
Frame = +2
Query: 182 IFKYVDQNKDSYKQLLKEAVAIPSVSCDVKYRADCIRMVHWMQDK--------------L 319
IF +V +++ Y + L +AVAI SVS + R + +MV+ + +K L
Sbjct: 36 IFVFV-YSQELYIKRLADAVAIKSVSAWPETRGEITKMVNHVAEKIRCKIYKVYRVLMEL 94
Query: 320 KEVGATTELRDVGFQTI-DGKDVQXXXXXXXXXXNDPKKNTVCIY 451
K++G EL DVG +T+ DG + ++P K T Y
Sbjct: 95 KKLGTEVELVDVGTETLPDGSTLPLPPVLLGILGSNPAKKTPVDY 139
>SB_39672| Best HMM Match : Peptidase_M20 (HMM E-Value=9.9e-09)
Length = 702
Score = 35.5 bits (78), Expect = 0.048
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +2
Query: 446 IYGHLDVQPALKSDGWETEPFELVERNEKLYGRGSTDDKGPVLGWLHTINAYKGTGAELP 625
I HLDV PA S W+ PF+ ++ ++GRG+ D K V+ L + A G +
Sbjct: 464 IASHLDVVPAPGS--WDVPPFDGRVKDGYIWGRGTLDVKNGVMASLEAVQALLKLGQKPK 521
Query: 626 VNLKFIFECMEE-SGSEGLDSLLM 694
+ + EE G++G ++ M
Sbjct: 522 RSFYLAYGHDEEVQGADGARNIGM 545
>SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2529
Score = 32.7 bits (71), Expect = 0.34
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = +2
Query: 50 IFNTLIK-LPATKQLVPFFPAYHQHYSV-SSKQVSAKMATEKTLPEIFKYVDQNKDSYKQ 223
IF L K + TK VP A + + V SSK VS + AT TLPE+ + +D D+ +
Sbjct: 1653 IFQRLDKRVTKTKSSVPLLAALRRCFVVASSKDVSPRRATTVTLPEL-RAMDDLADAADR 1711
Query: 224 LLKEAVAIPSVSCD 265
+ + I S D
Sbjct: 1712 RVAHVLPIASSESD 1725
>SB_53291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 675
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 2 GRPMMTSLTLINRATCIFNTLIKLPATKQLVPFFPAYH 115
GRP+ SL +NR N I+ ++ +PF PAYH
Sbjct: 451 GRPLRDSLMFVNRLEKFSNPHIRPLWRQRKMPFGPAYH 488
>SB_56221| Best HMM Match : AOX (HMM E-Value=3.6)
Length = 361
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +2
Query: 125 SVSSKQVSAKMATEKTLPEIFKYVDQNKDSYKQLLKEAVAIPSVSCD 265
S SSK VS++ AT TLPE+ + +D D+ + + A+ I S D
Sbjct: 18 SRSSKDVSSRRATTVTLPEL-RAMDDLADAADRRVAHALPIASSESD 63
>SB_42534| Best HMM Match : DUF699 (HMM E-Value=0)
Length = 739
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +2
Query: 563 GPVLGWLH-TINAYKGTGAELPVNLKFIFECMEESGSEGLDS 685
GP L ++ TIN Y+GTG L +LK + + ++S +G+ S
Sbjct: 128 GPYLVFMSSTINGYEGTGRSL--SLKLLQQLRQQSVPQGVTS 167
>SB_26826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 221
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Frame = +2
Query: 17 TSLTLINRATCIFNTLIKLPATKQLVPFFPAYHQHYSVSSKQVSAKMATEKTLPEIFK-- 190
TSL C + L + P+T + + P+ H Y SA + TE+ P ++
Sbjct: 29 TSLRFSVSINCPYTPLTECPSTYRAPLYLPSTHSTYRAPLYLPSAPLLTER--PSTYRAP 86
Query: 191 -YVDQNKDSYK 220
Y+ N +Y+
Sbjct: 87 LYLPSNTSTYR 97
>SB_6120| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 84
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +2
Query: 92 VPFFPAYHQHYSVSSKQVSAKMATEKTLPEIFKYVDQNKDSYKQLLKEAVAIPSVSCD 265
+P P+ S SSK VS + AT TLPE+ + +D D+ + + + I S D
Sbjct: 8 IPCRPSDVASSSRSSKDVSPRRATTVTLPEL-RAMDDLADAADRRVAHVLPIASSESD 64
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,365,677
Number of Sequences: 59808
Number of extensions: 512904
Number of successful extensions: 1371
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1370
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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