Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_M02
(434 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 272 1e-74
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 166 1e-42
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 156 2e-39
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 138 3e-34
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 84 8e-18
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 83 1e-17
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 71 8e-14
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 62 4e-11
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 37 0.002
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 30 0.18
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 2.2
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 26 2.9
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 25 5.0
SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces pomb... 25 6.7
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo... 24 8.8
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma... 24 8.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 272 bits (668), Expect = 1e-74
Identities = 126/144 (87%), Positives = 132/144 (91%)
Frame = +1
Query: 1 VGDEAXSKRGILTLKYPIEHGIITNWDDMEKIWHHXFYXELRVAPEEHPVLLTEAPLNPK 180
VGDEA SKRGILTLKYPIEHGI+ NWDDMEKIWHH FY ELRVAPEEHP LLTEAPLNPK
Sbjct: 54 VGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPK 113
Query: 181 ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIXLDSGDGVSHTVPIYXGYALXH 360
+NREKMTQI+FETFN+PA YVAIQAVLSLYASGRTTGI LDSGDGV+HTVPIY GYAL H
Sbjct: 114 SNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPH 173
Query: 361 XILRLDLAGRDLTDYLMXILTERG 432
I+RLDLAGRDLTDYLM IL ERG
Sbjct: 174 AIMRLDLAGRDLTDYLMKILMERG 197
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 166 bits (404), Expect = 1e-42
Identities = 73/144 (50%), Positives = 105/144 (72%)
Frame = +1
Query: 1 VGDEAXSKRGILTLKYPIEHGIITNWDDMEKIWHHXFYXELRVAPEEHPVLLTEAPLNPK 180
VGDEA + R +L +KYP+E+GII ++++M ++W + F+ +L++ P +LLTE P+NP
Sbjct: 54 VGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPV 113
Query: 181 ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIXLDSGDGVSHTVPIYXGYALXH 360
ANREKM + MFE + +YVAIQAVLSLYA G ++G+ +DSGDGV+H VP+Y L H
Sbjct: 114 ANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNH 173
Query: 361 XILRLDLAGRDLTDYLMXILTERG 432
+ RLD+AGRD T YL+ +L +G
Sbjct: 174 LVGRLDVAGRDATRYLISLLLRKG 197
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 156 bits (378), Expect = 2e-39
Identities = 72/145 (49%), Positives = 101/145 (69%), Gaps = 1/145 (0%)
Frame = +1
Query: 1 VGDEAXSKRGILTLKYPIEHGIITNWDDMEKIWHHXFYXE-LRVAPEEHPVLLTEAPLNP 177
VG EA + RG+L ++ PIE GII NW DME+IW + + + L PEEHP+LLTE PL
Sbjct: 58 VGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLAN 117
Query: 178 KANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIXLDSGDGVSHTVPIYXGYALX 357
N+EK+ + +ET N PA+ ++Q VL+LYAS RTTGI L+ GDG++H+VPIY G+++
Sbjct: 118 IRNKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIP 177
Query: 358 HXILRLDLAGRDLTDYLMXILTERG 432
I + ++ GRD+TDYL L + G
Sbjct: 178 SAIQQEEIGGRDVTDYLQLQLRKSG 202
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 138 bits (335), Expect = 3e-34
Identities = 68/152 (44%), Positives = 93/152 (61%), Gaps = 9/152 (5%)
Frame = +1
Query: 1 VGDEAXSKRGI-LTLKYPIEHGIITNWDDMEKIWHHXFYXELRVAPEEHPVLLTEAPLNP 177
+G++A K +L YPI HG I NWD ME+ W + LR PE+H LLTE PLNP
Sbjct: 76 IGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNP 135
Query: 178 KANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRT--------TGIXLDSGDGVSHTVP 333
NRE +IMFE+FN +Y+A+QAVL+L AS + TG +DSGDGV+H +P
Sbjct: 136 PENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIP 195
Query: 334 IYXGYALXHXILRLDLAGRDLTDYLMXILTER 429
+ GY + I + LAGRD+T ++ +L +R
Sbjct: 196 VAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDR 227
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 84.2 bits (199), Expect = 8e-18
Identities = 43/132 (32%), Positives = 65/132 (49%)
Frame = +1
Query: 34 LTLKYPIEHGIITNWDDMEKIWHHXFYXELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 213
+ +K I +G + NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 214 ETFNSPAMYVAIQAVLSLYASGRTTGIXLDSGDGVSHTVPIYXGYALXHXILRLDLAGRD 393
E+ PA Y+A Q + +ASG+ T +D G S IY G+ L +G
Sbjct: 123 ESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNA 182
Query: 394 LTDYLMXILTER 429
+ D L L ++
Sbjct: 183 INDILAQTLRDK 194
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 83.4 bits (197), Expect = 1e-17
Identities = 42/142 (29%), Positives = 78/142 (54%), Gaps = 3/142 (2%)
Frame = +1
Query: 1 VGDEAXSKRGILTL-KYPIEHGIITNWDDMEKIWHHXFYXELRVAPEEHPVLLTEAPLNP 177
VG++ + G ++ + P E +I+NWD ME++ + F +L + EHP+ +TE NP
Sbjct: 69 VGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANP 127
Query: 178 KANREKMTQIMFETFNSPAMYVAIQAVLSLYASGR--TTGIXLDSGDGVSHTVPIYXGYA 351
R MT+++FE +N+P++ I + S Y + + ++GI L+ G+ SH +P+ G
Sbjct: 128 TYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGER 187
Query: 352 LXHXILRLDLAGRDLTDYLMXI 417
+ R+ G + YL+ +
Sbjct: 188 ILSEAKRISWGGSQSSSYLLKL 209
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 70.9 bits (166), Expect = 8e-14
Identities = 32/110 (29%), Positives = 59/110 (53%)
Frame = +1
Query: 58 HGIITNWDDMEKIWHHXFYXELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAM 237
+GII +W+ W +L+V P E+ +++TE NP++ R+++ + FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 238 YVAIQAVLSLYASGRTTGIXLDSGDGVSHTVPIYXGYALXHXILRLDLAG 387
Y+ QAV +A+ ++T + +D G + P+ G + I + LAG
Sbjct: 134 YLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDGLIIRKGIFKQSLAG 183
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 62.1 bits (144), Expect = 4e-11
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 3/129 (2%)
Frame = +1
Query: 49 PIEHGIITNWDDMEKIWHHXFYXELRVAPE---EHPVLLTEAPLNPKANREKMTQIMFET 219
PI+ G + +W+ ++ W H + L+ + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKHLYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFEE 172
Query: 220 FNSPAMYVAIQAVLSLYASGRTTGIXLDSGDGVSHTVPIYXGYALXHXILRLDLAGRDLT 399
P +A + ++ LYA G G+ +D G + PI G + +L L GR +T
Sbjct: 173 CQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYMT 232
Query: 400 DYLMXILTE 426
+L +L E
Sbjct: 233 QHLQNLLRE 241
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 36.7 bits (81), Expect = 0.002
Identities = 34/161 (21%), Positives = 64/161 (39%), Gaps = 18/161 (11%)
Frame = +1
Query: 1 VGDEAXSKRGILTLKYPIEH--GIITNWDDMEKIWHHXFYXELRVAPE--EHPVLLTEAP 168
+G+E + TL++ H G + +W +W + P ++ +LLT+
Sbjct: 44 LGNELANCNDFTTLQFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPV 103
Query: 169 LNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTG--------------IXLDS 306
+ Q++FE F A A L + G T + +DS
Sbjct: 104 FTMPSIEHNTIQLVFEEFQFDAYLPCTPAELIPWDHGSFTMNQEDAYTGQHGECVLVIDS 163
Query: 307 GDGVSHTVPIYXGYALXHXILRLDLAGRDLTDYLMXILTER 429
G +H +P+ + R+D+ G+ LT+YL +++ R
Sbjct: 164 GYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYR 204
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 29.9 bits (64), Expect = 0.18
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +1
Query: 109 FYXELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNSPAM---YVAIQ 252
+Y L E+HP+LLT+ A L P+ + ++ +I ++ N+P + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 2.2
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 151 LLTEAPLNPKANREKMTQIMFETFN 225
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 25.8 bits (54), Expect = 2.9
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +3
Query: 291 YXARLRRWCLPHRTHLXRLRSXPXHPPSGLGWSRLDRLPHEXPH 422
Y +++ +C P +RS P PP+ R PH PH
Sbjct: 139 YNPQVQSYCRPEPLSSNHVRSCPPFPPTQHHHPH-TRPPHHPPH 181
>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 25.0 bits (52), Expect = 5.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 332 PSTKVTLXPTPSSVWTWLVAT*PTTS*XSSP 424
P T + P P++++T VAT T S S+P
Sbjct: 963 PGTVEVILPAPTTIYTGTVATTITYSSSSTP 993
>SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 281
Score = 24.6 bits (51), Expect = 6.7
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +2
Query: 323 TPYPSTKVTLXPTPSSVWTWL 385
T YP L P+ SS W W+
Sbjct: 156 TKYPLGAAPLRPSQSSKWQWI 176
>SPBC530.01 |gyp1||GTPase activating protein Gyp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 24.2 bits (50), Expect = 8.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 260 STAWMATYMAGELKVSNMIWVIFSLLALGLRGAS 159
S WM + EL +SN+I + + +A G++G S
Sbjct: 415 SFRWMNCLLMRELSISNIIRMWDTYMAEGVQGFS 448
>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 319
Score = 24.2 bits (50), Expect = 8.8
Identities = 8/31 (25%), Positives = 17/31 (54%)
Frame = +1
Query: 46 YPIEHGIITNWDDMEKIWHHXFYXELRVAPE 138
YP G++ +W ++E + E+R+ P+
Sbjct: 244 YPRTDGLLFSWSELESMNSENMKPEIRLIPK 274
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,435,659
Number of Sequences: 5004
Number of extensions: 23769
Number of successful extensions: 96
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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