Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_M02
(434 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 285 8e-78
SB_56| Best HMM Match : Actin (HMM E-Value=0) 285 8e-78
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 285 8e-78
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 285 1e-77
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 233 5e-62
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 168 1e-42
SB_54| Best HMM Match : Actin (HMM E-Value=0) 167 3e-42
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 147 4e-36
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 146 7e-36
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 137 4e-33
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 100 6e-22
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 53 9e-08
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 52 2e-07
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 49 2e-06
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 36 0.019
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.54
SB_54914| Best HMM Match : Patched (HMM E-Value=1.3e-09) 30 0.72
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43) 28 3.8
SB_5357| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_31099| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_6273| Best HMM Match : MAM (HMM E-Value=0) 27 5.0
SB_28336| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.7
SB_20246| Best HMM Match : RVT_1 (HMM E-Value=1.4e-30) 27 6.7
SB_8780| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.7
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 285 bits (700), Expect = 8e-78
Identities = 133/144 (92%), Positives = 136/144 (94%)
Frame = +1
Query: 1 VGDEAXSKRGILTLKYPIEHGIITNWDDMEKIWHHXFYXELRVAPEEHPVLLTEAPLNPK 180
VGDEA SKRGILTLKYPIEHGI+TNWDDMEKIWHH FY ELRVAPEEHPVLLTEAPLNPK
Sbjct: 54 VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK 113
Query: 181 ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIXLDSGDGVSHTVPIYXGYALXH 360
ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGI +DSGDGV+HTVPIY GYAL H
Sbjct: 114 ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPH 173
Query: 361 XILRLDLAGRDLTDYLMXILTERG 432
ILRLDLAGRDLTDYLM ILTERG
Sbjct: 174 AILRLDLAGRDLTDYLMKILTERG 197
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 285 bits (700), Expect = 8e-78
Identities = 133/144 (92%), Positives = 136/144 (94%)
Frame = +1
Query: 1 VGDEAXSKRGILTLKYPIEHGIITNWDDMEKIWHHXFYXELRVAPEEHPVLLTEAPLNPK 180
VGDEA SKRGILTLKYPIEHGI+TNWDDMEKIWHH FY ELRVAPEEHPVLLTEAPLNPK
Sbjct: 54 VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK 113
Query: 181 ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIXLDSGDGVSHTVPIYXGYALXH 360
ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGI +DSGDGV+HTVPIY GYAL H
Sbjct: 114 ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPH 173
Query: 361 XILRLDLAGRDLTDYLMXILTERG 432
ILRLDLAGRDLTDYLM ILTERG
Sbjct: 174 AILRLDLAGRDLTDYLMKILTERG 197
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 285 bits (700), Expect = 8e-78
Identities = 133/144 (92%), Positives = 136/144 (94%)
Frame = +1
Query: 1 VGDEAXSKRGILTLKYPIEHGIITNWDDMEKIWHHXFYXELRVAPEEHPVLLTEAPLNPK 180
VGDEA SKRGILTLKYPIEHGI+TNWDDMEKIWHH FY ELRVAPEEHPVLLTEAPLNPK
Sbjct: 55 VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK 114
Query: 181 ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIXLDSGDGVSHTVPIYXGYALXH 360
ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGI +DSGDGV+HTVPIY GYAL H
Sbjct: 115 ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPH 174
Query: 361 XILRLDLAGRDLTDYLMXILTERG 432
ILRLDLAGRDLTDYLM ILTERG
Sbjct: 175 AILRLDLAGRDLTDYLMKILTERG 198
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 285 bits (698), Expect = 1e-77
Identities = 132/144 (91%), Positives = 136/144 (94%)
Frame = +1
Query: 1 VGDEAXSKRGILTLKYPIEHGIITNWDDMEKIWHHXFYXELRVAPEEHPVLLTEAPLNPK 180
VGDEA SKRGILTLKYPIEHGI+TNWDDMEKIWHH FY ELRVAPEEHPVLLTEAPLNPK
Sbjct: 55 VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK 114
Query: 181 ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIXLDSGDGVSHTVPIYXGYALXH 360
ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGI +DSGDGV+HTVPIY GYAL H
Sbjct: 115 ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPH 174
Query: 361 XILRLDLAGRDLTDYLMXILTERG 432
I+RLDLAGRDLTDYLM ILTERG
Sbjct: 175 AIIRLDLAGRDLTDYLMKILTERG 198
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 233 bits (570), Expect = 5e-62
Identities = 107/113 (94%), Positives = 109/113 (96%)
Frame = +1
Query: 1 VGDEAXSKRGILTLKYPIEHGIITNWDDMEKIWHHXFYXELRVAPEEHPVLLTEAPLNPK 180
VGDEA SKRGILTLKYPIEHGI+TNWDDMEKIWHH FY ELRVAPEEHPVLLTEAPLNPK
Sbjct: 55 VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK 114
Query: 181 ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIXLDSGDGVSHTVPIY 339
ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGI +DSGDGVSHTVPIY
Sbjct: 115 ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIY 167
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 168 bits (409), Expect = 1e-42
Identities = 74/145 (51%), Positives = 102/145 (70%), Gaps = 1/145 (0%)
Frame = +1
Query: 1 VGDEAXSKRGILTLKYPIEHGIITNWDDMEKIWHHXF-YXELRVAPEEHPVLLTEAPLNP 177
VGDEA R +L + YP+++GI+ NWDDM+ +W + F ++ + P VLLTE PLNP
Sbjct: 57 VGDEASQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNP 116
Query: 178 KANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIXLDSGDGVSHTVPIYXGYALX 357
NREKM ++MFE + +Y+AIQAVL+LYA G TG+ +DSGDGV+H P+Y G+AL
Sbjct: 117 MKNREKMIEVMFENYQFEGVYIAIQAVLTLYAQGLLTGVVIDSGDGVTHICPVYEGFALP 176
Query: 358 HXILRLDLAGRDLTDYLMXILTERG 432
H RLD+AGRD+T YL+ ++ RG
Sbjct: 177 HLTRRLDIAGRDITKYLIKLMLLRG 201
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 167 bits (406), Expect = 3e-42
Identities = 77/114 (67%), Positives = 90/114 (78%)
Frame = +1
Query: 91 KIWHHXFYXELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLY 270
K+W H F +LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P MYVA+QAV++LY
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALY 2188
Query: 271 ASGRTTGIXLDSGDGVSHTVPIYXGYALXHXILRLDLAGRDLTDYLMXILTERG 432
ASGRTTG D GDGVSHTVP+Y GY L H R+DLAGRDLT YL ++TERG
Sbjct: 2189 ASGRTTGTVFDCGDGVSHTVPVYDGYWLPHATQRIDLAGRDLTHYLQRLVTERG 2242
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 147 bits (356), Expect = 4e-36
Identities = 70/83 (84%), Positives = 75/83 (90%)
Frame = +1
Query: 184 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIXLDSGDGVSHTVPIYXGYALXHX 363
N + M +IMFETFNSPAMYVAIQAVLSLYASGRTTGI +DSGDGV+HTVPIY GYAL H
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHA 137
Query: 364 ILRLDLAGRDLTDYLMXILTERG 432
I+RLDLAGRDLTDYLM ILTERG
Sbjct: 138 IIRLDLAGRDLTDYLMKILTERG 160
Score = 71.3 bits (167), Expect = 3e-13
Identities = 31/37 (83%), Positives = 32/37 (86%)
Frame = +1
Query: 1 VGDEAXSKRGILTLKYPIEHGIITNWDDMEKIWHHXF 111
VGDEA SKRGILTLKYPIEHGI+TNWDDMEKI F
Sbjct: 54 VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 146 bits (354), Expect = 7e-36
Identities = 62/98 (63%), Positives = 83/98 (84%)
Frame = +1
Query: 139 EHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIXLDSGDGV 318
+HPVLLTEAPLNP+ NREK ++ FETFN PA+++++QAVLSLYA+GRTTG+ LD+GDGV
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDAGDGV 185
Query: 319 SHTVPIYXGYALXHXILRLDLAGRDLTDYLMXILTERG 432
SH+VPIY G+A+ H I+R D+AGRD++ YL +L + G
Sbjct: 186 SHSVPIYEGFAMPHSIMRTDIAGRDVSRYLRLLLRKEG 223
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 137 bits (331), Expect = 4e-33
Identities = 64/76 (84%), Positives = 68/76 (89%)
Frame = +1
Query: 205 IMFETFNSPAMYVAIQAVLSLYASGRTTGIXLDSGDGVSHTVPIYXGYALXHXILRLDLA 384
IMFE FNSPA+YVAIQAVLSLYASGRTTG+ DSGDGVSH VPIY GYAL H ILRLDLA
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRTTGVVFDSGDGVSHNVPIYEGYALPHAILRLDLA 60
Query: 385 GRDLTDYLMXILTERG 432
GRDLTDYLM ++TERG
Sbjct: 61 GRDLTDYLMKLMTERG 76
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 100 bits (239), Expect = 6e-22
Identities = 45/117 (38%), Positives = 74/117 (63%)
Frame = +1
Query: 49 PIEHGIITNWDDMEKIWHHXFYXELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNS 228
PI+ G+I +WD EKI + + ++ HP+L++EA N + REK+T++MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 229 PAMYVAIQAVLSLYASGRTTGIXLDSGDGVSHTVPIYXGYALXHXILRLDLAGRDLT 399
PA ++ +VL+ +A+GR+ G+ +DSG + VP++ GY L I+R LAG +T
Sbjct: 63 PAFFLCKNSVLTAFANGRSNGLVIDSGATQTSAVPVHDGYVLQQAIVRSPLAGDFIT 119
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 53.2 bits (122), Expect = 9e-08
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 8/70 (11%)
Frame = +1
Query: 244 AIQAVLSLYASG-------RT-TGIXLDSGDGVSHTVPIYXGYALXHXILRLDLAGRDLT 399
A +AVL+L AS RT TG +DSGDGV+H +P+ GY + I + +AGRD+T
Sbjct: 40 ATKAVLALAASWTSRQVGERTLTGCVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDIT 99
Query: 400 DYLMXILTER 429
++ +L ER
Sbjct: 100 FFVQQLLRER 109
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 52.0 bits (119), Expect = 2e-07
Identities = 23/52 (44%), Positives = 30/52 (57%)
Frame = +1
Query: 1 VGDEAXSKRGILTLKYPIEHGIITNWDDMEKIWHHXFYXELRVAPEEHPVLL 156
+GDEA K T K+PI H I+ +WD ME+ W + LR PE+H LL
Sbjct: 286 IGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
Score = 30.3 bits (65), Expect = 0.72
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 286 TGIXLDSGDGVSHTVPI 336
TG +DSGDGV+H +P+
Sbjct: 356 TGCVIDSGDGVTHVIPV 372
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 48.8 bits (111), Expect = 2e-06
Identities = 24/60 (40%), Positives = 33/60 (55%)
Frame = +1
Query: 250 QAVLSLYASGRTTGIXLDSGDGVSHTVPIYXGYALXHXILRLDLAGRDLTDYLMXILTER 429
Q LSLYASG T G+ L SG + IY G+ L H + L++ G LT+ L L ++
Sbjct: 767 QLSLSLYASGMTLGVCLSSGFSCTQAAVIYEGHTLNHTLQTLEIGGHHLTENLKQYLRDQ 826
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 35.5 bits (78), Expect = 0.019
Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 8/132 (6%)
Frame = +1
Query: 1 VGDEAXSKRGILTLKY--PIEHGIITNWDDMEKIWHHXFYXELRVAPEEHPVLLTEAPLN 174
+GD+ + L Y P + G + NWD ++IW + F E
Sbjct: 274 IGDQIEECKDYSALFYVLPFQKGFLVNWDVEKQIWDYTFGKE------------------ 315
Query: 175 PKANREKMTQIMFETFNSPAMYVAIQAVLSLY------ASGRTTGIXLDSGDGVSHTVPI 336
+ M +I+FE +N A+ A LS Y S + +D+G +H VP+
Sbjct: 316 --GLEDAMDEILFEEYNFKALSRTTAAQLSAYKCHQDMVSKNPVCLVVDTGYSFTHIVPV 373
Query: 337 YXGYALXHXILR 372
+ G + + R
Sbjct: 374 FNGKVIKKAVRR 385
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 30.7 bits (66), Expect = 0.54
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = +1
Query: 1 VGDEAXSKRGIL-TLKYPIEHGIITNWDDMEKIWHHXFYXELRVAPE--EHPVLLTEAPL 171
VG++ S I L+ P + ++T+++ E++ H F P HPV++TE
Sbjct: 117 VGNDIGSVEMIRWALRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTEPVC 176
Query: 172 NPKANRE 192
NP R+
Sbjct: 177 NPNYCRQ 183
>SB_54914| Best HMM Match : Patched (HMM E-Value=1.3e-09)
Length = 645
Score = 30.3 bits (65), Expect = 0.72
Identities = 19/61 (31%), Positives = 31/61 (50%)
Frame = -3
Query: 201 GHLLPVGLGVEGGFGEQHGVLLGGDTQLXVEGVVPDLLHVIPVGDDTVLDGVLQSEDTSL 22
G +L V LG+ GFG V G + + GV+P L+ I + D ++ + +D SL
Sbjct: 157 GGILAVALGILAGFGLAMAV---GTPFISLAGVLPFLILGIGIDDMFIIINEMDRQDNSL 213
Query: 21 A 19
+
Sbjct: 214 S 214
>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1974
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +1
Query: 184 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIXLDSGDGVSHTVP 333
NR + +++ E S ++ + +L+LY RT D+ + HT P
Sbjct: 437 NRVEFVKLLLENGVSMGQFLTPERLLALYRGVRTCNATPDNNNRACHTTP 486
>SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43)
Length = 506
Score = 27.9 bits (59), Expect = 3.8
Identities = 17/38 (44%), Positives = 18/38 (47%)
Frame = +2
Query: 317 SPTPYPSTKVTLXPTPSSVWTWLVAT*PTTS*XSSPRG 430
+PTP P K T PTPS T PT S S P G
Sbjct: 223 APTPPPPVKTTAAPTPSPPQT---PPPPTGSCGSKPSG 257
>SB_5357| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 183
Score = 27.9 bits (59), Expect = 3.8
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Frame = +1
Query: 124 RVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSP--AMYVAIQAVLSLYASGRTTGIX 297
++ P+ P++ PL KA R + + SP +YVA+ + GRT G+
Sbjct: 71 KLDPQRTPII----PLGLKAERTVHRVTLNPSTASPEETLYVAVPKLSEGVTLGRTHGLE 126
Query: 298 LDSGDGVSHTVPIYXGYALXHXILRLDLAGRDLTD 402
L ++TV G L L++ AG L D
Sbjct: 127 LSLSGHANNTVVNNVGRNLVSR-LKITFAGETLQD 160
>SB_31099| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 319
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Frame = -1
Query: 260 STAWMATYMAGELKVSNMIWV---IFSLLALGL 171
S AW+ + + EL+ S +WV IFS+L +G+
Sbjct: 163 SVAWLCSLLYLELEASLYVWVPSLIFSILIIGV 195
>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
Length = 4272
Score = 27.5 bits (58), Expect = 5.0
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 320 PTPYPSTKVTLXPTPSSVW 376
PTP+P+T V +P S+W
Sbjct: 1373 PTPFPTTPVPPTTSPPSIW 1391
>SB_28336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 27.1 bits (57), Expect = 6.7
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 169 LNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGI 294
+ PK ++ ++F F P M +A++ + A+G TGI
Sbjct: 174 ITPKRATSQIIFVLFCIFGLPVMMLALKTAGDIIAAGLKTGI 215
>SB_20246| Best HMM Match : RVT_1 (HMM E-Value=1.4e-30)
Length = 1191
Score = 27.1 bits (57), Expect = 6.7
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Frame = +3
Query: 240 RRHPSRALAVRLRS----YHRYXARLRRWC 317
R P RA+ +RL YHR+ RL WC
Sbjct: 5 RWRPPRAIGLRLYGSTLEYHRHNKRLTTWC 34
>SB_8780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 27.1 bits (57), Expect = 6.7
Identities = 15/73 (20%), Positives = 28/73 (38%)
Frame = -1
Query: 386 PAKSRRRMXWXRA*PX*MGTVWETPSPESSXIPVVRPEAYSESTAWMATYMAGELKVSNM 207
P+ + W P T W +PSP+ P ++T+W + +S++
Sbjct: 93 PSPQYKTTSWSLPLPQHKTTSWSSPSPKYKTTSWTSPSPQYKTTSWSSPLPQQTTFLSSL 152
Query: 206 IWVIFSLLALGLR 168
+I L + R
Sbjct: 153 YHIIGRLSGVHYR 165
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,305,034
Number of Sequences: 59808
Number of extensions: 202981
Number of successful extensions: 709
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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