Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_M02
(434 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 285 1e-77
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 285 1e-77
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 284 2e-77
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 284 2e-77
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 284 2e-77
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 284 2e-77
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 284 2e-77
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 284 2e-77
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 284 2e-77
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 284 2e-77
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 276 4e-75
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 201 2e-52
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 173 6e-44
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 144 3e-35
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 109 9e-25
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 70 8e-13
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 70 8e-13
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 70 8e-13
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 64 4e-11
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 46 2e-05
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 46 2e-05
U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical pr... 44 6e-05
U97193-7|AAK68163.1| 299|Caenorhabditis elegans Yeast sir relat... 30 0.63
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 29 1.1
AY349016-1|AAQ55496.1| 394|Caenorhabditis elegans NHR-41 protein. 27 4.4
AY349015-1|AAQ55495.1| 459|Caenorhabditis elegans NHR-41B protein. 27 4.4
AY349014-1|AAQ55494.1| 583|Caenorhabditis elegans NHR-41A protein. 27 4.4
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 285 bits (698), Expect = 1e-77
Identities = 133/144 (92%), Positives = 136/144 (94%)
Frame = +1
Query: 1 VGDEAXSKRGILTLKYPIEHGIITNWDDMEKIWHHXFYXELRVAPEEHPVLLTEAPLNPK 180
VGDEA SKRGILTLKYPIEHGI+TNWDDMEKIWHH FY ELRVAPEEHPVLLTEAPLNPK
Sbjct: 55 VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK 114
Query: 181 ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIXLDSGDGVSHTVPIYXGYALXH 360
ANREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTGI LDSGDGV+HTVPIY GYAL H
Sbjct: 115 ANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPH 174
Query: 361 XILRLDLAGRDLTDYLMXILTERG 432
ILRLDLAGRDLTDYLM ILTERG
Sbjct: 175 AILRLDLAGRDLTDYLMKILTERG 198
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 285 bits (698), Expect = 1e-77
Identities = 133/144 (92%), Positives = 136/144 (94%)
Frame = +1
Query: 1 VGDEAXSKRGILTLKYPIEHGIITNWDDMEKIWHHXFYXELRVAPEEHPVLLTEAPLNPK 180
VGDEA SKRGILTLKYPIEHGI+TNWDDMEKIWHH FY ELRVAPEEHPVLLTEAPLNPK
Sbjct: 55 VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK 114
Query: 181 ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIXLDSGDGVSHTVPIYXGYALXH 360
ANREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTGI LDSGDGV+HTVPIY GYAL H
Sbjct: 115 ANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPH 174
Query: 361 XILRLDLAGRDLTDYLMXILTERG 432
ILRLDLAGRDLTDYLM ILTERG
Sbjct: 175 AILRLDLAGRDLTDYLMKILTERG 198
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 284 bits (697), Expect = 2e-77
Identities = 132/144 (91%), Positives = 136/144 (94%)
Frame = +1
Query: 1 VGDEAXSKRGILTLKYPIEHGIITNWDDMEKIWHHXFYXELRVAPEEHPVLLTEAPLNPK 180
VGDEA SKRGILTLKYPIEHGI+TNWDDMEKIWHH FY ELRVAPEEHPVLLTEAPLNPK
Sbjct: 55 VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK 114
Query: 181 ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIXLDSGDGVSHTVPIYXGYALXH 360
ANREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTG+ LDSGDGV+HTVPIY GYAL H
Sbjct: 115 ANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPH 174
Query: 361 XILRLDLAGRDLTDYLMXILTERG 432
ILRLDLAGRDLTDYLM ILTERG
Sbjct: 175 AILRLDLAGRDLTDYLMKILTERG 198
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 284 bits (697), Expect = 2e-77
Identities = 132/144 (91%), Positives = 136/144 (94%)
Frame = +1
Query: 1 VGDEAXSKRGILTLKYPIEHGIITNWDDMEKIWHHXFYXELRVAPEEHPVLLTEAPLNPK 180
VGDEA SKRGILTLKYPIEHGI+TNWDDMEKIWHH FY ELRVAPEEHPVLLTEAPLNPK
Sbjct: 55 VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK 114
Query: 181 ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIXLDSGDGVSHTVPIYXGYALXH 360
ANREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTG+ LDSGDGV+HTVPIY GYAL H
Sbjct: 115 ANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPH 174
Query: 361 XILRLDLAGRDLTDYLMXILTERG 432
ILRLDLAGRDLTDYLM ILTERG
Sbjct: 175 AILRLDLAGRDLTDYLMKILTERG 198
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 284 bits (697), Expect = 2e-77
Identities = 132/144 (91%), Positives = 136/144 (94%)
Frame = +1
Query: 1 VGDEAXSKRGILTLKYPIEHGIITNWDDMEKIWHHXFYXELRVAPEEHPVLLTEAPLNPK 180
VGDEA SKRGILTLKYPIEHGI+TNWDDMEKIWHH FY ELRVAPEEHPVLLTEAPLNPK
Sbjct: 55 VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK 114
Query: 181 ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIXLDSGDGVSHTVPIYXGYALXH 360
ANREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTG+ LDSGDGV+HTVPIY GYAL H
Sbjct: 115 ANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPH 174
Query: 361 XILRLDLAGRDLTDYLMXILTERG 432
ILRLDLAGRDLTDYLM ILTERG
Sbjct: 175 AILRLDLAGRDLTDYLMKILTERG 198
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 284 bits (697), Expect = 2e-77
Identities = 132/144 (91%), Positives = 136/144 (94%)
Frame = +1
Query: 1 VGDEAXSKRGILTLKYPIEHGIITNWDDMEKIWHHXFYXELRVAPEEHPVLLTEAPLNPK 180
VGDEA SKRGILTLKYPIEHGI+TNWDDMEKIWHH FY ELRVAPEEHPVLLTEAPLNPK
Sbjct: 55 VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK 114
Query: 181 ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIXLDSGDGVSHTVPIYXGYALXH 360
ANREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTG+ LDSGDGV+HTVPIY GYAL H
Sbjct: 115 ANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPH 174
Query: 361 XILRLDLAGRDLTDYLMXILTERG 432
ILRLDLAGRDLTDYLM ILTERG
Sbjct: 175 AILRLDLAGRDLTDYLMKILTERG 198
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 284 bits (697), Expect = 2e-77
Identities = 132/144 (91%), Positives = 136/144 (94%)
Frame = +1
Query: 1 VGDEAXSKRGILTLKYPIEHGIITNWDDMEKIWHHXFYXELRVAPEEHPVLLTEAPLNPK 180
VGDEA SKRGILTLKYPIEHGI+TNWDDMEKIWHH FY ELRVAPEEHPVLLTEAPLNPK
Sbjct: 55 VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK 114
Query: 181 ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIXLDSGDGVSHTVPIYXGYALXH 360
ANREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTG+ LDSGDGV+HTVPIY GYAL H
Sbjct: 115 ANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPH 174
Query: 361 XILRLDLAGRDLTDYLMXILTERG 432
ILRLDLAGRDLTDYLM ILTERG
Sbjct: 175 AILRLDLAGRDLTDYLMKILTERG 198
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 284 bits (697), Expect = 2e-77
Identities = 132/144 (91%), Positives = 136/144 (94%)
Frame = +1
Query: 1 VGDEAXSKRGILTLKYPIEHGIITNWDDMEKIWHHXFYXELRVAPEEHPVLLTEAPLNPK 180
VGDEA SKRGILTLKYPIEHGI+TNWDDMEKIWHH FY ELRVAPEEHPVLLTEAPLNPK
Sbjct: 11 VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK 70
Query: 181 ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIXLDSGDGVSHTVPIYXGYALXH 360
ANREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTG+ LDSGDGV+HTVPIY GYAL H
Sbjct: 71 ANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPH 130
Query: 361 XILRLDLAGRDLTDYLMXILTERG 432
ILRLDLAGRDLTDYLM ILTERG
Sbjct: 131 AILRLDLAGRDLTDYLMKILTERG 154
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 284 bits (697), Expect = 2e-77
Identities = 132/144 (91%), Positives = 136/144 (94%)
Frame = +1
Query: 1 VGDEAXSKRGILTLKYPIEHGIITNWDDMEKIWHHXFYXELRVAPEEHPVLLTEAPLNPK 180
VGDEA SKRGILTLKYPIEHGI+TNWDDMEKIWHH FY ELRVAPEEHPVLLTEAPLNPK
Sbjct: 41 VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK 100
Query: 181 ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIXLDSGDGVSHTVPIYXGYALXH 360
ANREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTG+ LDSGDGV+HTVPIY GYAL H
Sbjct: 101 ANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPH 160
Query: 361 XILRLDLAGRDLTDYLMXILTERG 432
ILRLDLAGRDLTDYLM ILTERG
Sbjct: 161 AILRLDLAGRDLTDYLMKILTERG 184
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 284 bits (697), Expect = 2e-77
Identities = 132/144 (91%), Positives = 136/144 (94%)
Frame = +1
Query: 1 VGDEAXSKRGILTLKYPIEHGIITNWDDMEKIWHHXFYXELRVAPEEHPVLLTEAPLNPK 180
VGDEA SKRGILTLKYPIEHGI+TNWDDMEKIWHH FY ELRVAPEEHPVLLTEAPLNPK
Sbjct: 55 VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK 114
Query: 181 ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIXLDSGDGVSHTVPIYXGYALXH 360
ANREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTG+ LDSGDGV+HTVPIY GYAL H
Sbjct: 115 ANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPH 174
Query: 361 XILRLDLAGRDLTDYLMXILTERG 432
ILRLDLAGRDLTDYLM ILTERG
Sbjct: 175 AILRLDLAGRDLTDYLMKILTERG 198
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 276 bits (677), Expect = 4e-75
Identities = 127/144 (88%), Positives = 134/144 (93%)
Frame = +1
Query: 1 VGDEAXSKRGILTLKYPIEHGIITNWDDMEKIWHHXFYXELRVAPEEHPVLLTEAPLNPK 180
VGDEA SKRGILTLKYPIEHGI+TNWDDMEKIWHH FY ELR+APEEHPVLLTEAPLNPK
Sbjct: 54 VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPK 113
Query: 181 ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIXLDSGDGVSHTVPIYXGYALXH 360
+NREKMTQIMFETFN+PAMYV IQAVLSLYASGRTTGI LD+GDGV+HTVPIY GYAL H
Sbjct: 114 SNREKMTQIMFETFNTPAMYVNIQAVLSLYASGRTTGIVLDTGDGVTHTVPIYEGYALPH 173
Query: 361 XILRLDLAGRDLTDYLMXILTERG 432
I RLDLAGRDLTDY+M ILTERG
Sbjct: 174 AIQRLDLAGRDLTDYMMKILTERG 197
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 201 bits (491), Expect = 2e-52
Identities = 87/145 (60%), Positives = 114/145 (78%), Gaps = 1/145 (0%)
Frame = +1
Query: 1 VGDEAXSKRGILTLKYPIEHGIITNWDDMEKIWHHXF-YXELRVAPEEHPVLLTEAPLNP 177
+G +A S RG+ +++YP+EHGI+ NW DMEKIW + F +L++ PEEHPVLLT+APLNP
Sbjct: 57 IGPKAESNRGLFSIEYPMEHGIVNNWSDMEKIWEYIFGQDQLKIFPEEHPVLLTDAPLNP 116
Query: 178 KANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIXLDSGDGVSHTVPIYXGYALX 357
NRE+ +I FETFN PA+Y+ +QAVLSLYA+GRTTG+ LDSGDGV+H VPI G+A+
Sbjct: 117 LKNRERSAEIFFETFNVPALYIQMQAVLSLYATGRTTGVVLDSGDGVTHAVPIVKGFAMK 176
Query: 358 HXILRLDLAGRDLTDYLMXILTERG 432
H I R+DLAGRD+T+YL +L G
Sbjct: 177 HAIQRMDLAGRDVTEYLRVLLRREG 201
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 173 bits (420), Expect = 6e-44
Identities = 77/145 (53%), Positives = 105/145 (72%), Gaps = 1/145 (0%)
Frame = +1
Query: 1 VGDEAXSKRGILTLKYPIEHGIITNWDDMEKIWHHXFYXE-LRVAPEEHPVLLTEAPLNP 177
VG+E R +L + YP+++GI+ NWDDM +W H F E L + P+E +LLTE PLNP
Sbjct: 57 VGEECSQLRQMLDINYPMDNGIVRNWDDMAHVWDHTFGPEKLDIDPKECKLLLTEPPLNP 116
Query: 178 KANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIXLDSGDGVSHTVPIYXGYALX 357
+NREKM Q+MFE + ++YVA+QAVL+LYA G TG+ +DSGDGV+H P+Y G+AL
Sbjct: 117 NSNREKMFQVMFEQYGFNSIYVAVQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFALH 176
Query: 358 HXILRLDLAGRDLTDYLMXILTERG 432
H RLD+AGRD+T YL+ +L +RG
Sbjct: 177 HLTRRLDIAGRDITKYLIKLLLQRG 201
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 144 bits (348), Expect = 3e-35
Identities = 69/152 (45%), Positives = 96/152 (63%), Gaps = 9/152 (5%)
Frame = +1
Query: 1 VGDEAXSKRGI-LTLKYPIEHGIITNWDDMEKIWHHXFYXELRVAPEEHPVLLTEAPLNP 177
+GDEA S T+KYPI HGI+ +WD ME+ W + LR PE+H LLTE PLN
Sbjct: 67 IGDEALSPAATNYTVKYPIRHGIVEDWDLMERYWEQCIFKYLRAEPEDHFFLLTEPPLNT 126
Query: 178 KANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRT--------TGIXLDSGDGVSHTVP 333
NRE +IMFE+FN P +Y+A+QAVL+L AS + TG+ +DSGDGV+H +P
Sbjct: 127 PENREYTAEIMFESFNVPGLYIAVQAVLALTASWNSREANERSLTGLVIDSGDGVTHCIP 186
Query: 334 IYXGYALXHXILRLDLAGRDLTDYLMXILTER 429
+ GY + I + +AGRD+T ++ +L +R
Sbjct: 187 VADGYVIGSCIKHIPIAGRDITYFIQSLLRDR 218
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 109 bits (262), Expect = 9e-25
Identities = 50/126 (39%), Positives = 79/126 (62%)
Frame = +1
Query: 52 IEHGIITNWDDMEKIWHHXFYXELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSP 231
++ G+I +W+ EKI H + L P EHPVL +E+ N +A REK+T+IMFE F P
Sbjct: 94 MKEGLIEDWELFEKIVEHSYENILYSNPSEHPVLFSESSWNDRARREKLTEIMFEKFQVP 153
Query: 232 AMYVAIQAVLSLYASGRTTGIXLDSGDGVSHTVPIYXGYALXHXILRLDLAGRDLTDYLM 411
A Y++ VLS +A GRT G+ +DSG + VP++ GYA+ H +++ + G +T+ L
Sbjct: 154 AYYLSKNVVLSCFAQGRTHGLMVDSGATQTSVVPVFDGYAVTHAVVKCPIGGDLITEQLA 213
Query: 412 XILTER 429
+L ++
Sbjct: 214 QMLDQQ 219
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 69.7 bits (163), Expect = 8e-13
Identities = 30/32 (93%), Positives = 31/32 (96%)
Frame = +1
Query: 1 VGDEAXSKRGILTLKYPIEHGIITNWDDMEKI 96
VGDEA SKRGILTLKYPIEHGI+TNWDDMEKI
Sbjct: 55 VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 69.7 bits (163), Expect = 8e-13
Identities = 30/32 (93%), Positives = 31/32 (96%)
Frame = +1
Query: 1 VGDEAXSKRGILTLKYPIEHGIITNWDDMEKI 96
VGDEA SKRGILTLKYPIEHGI+TNWDDMEKI
Sbjct: 55 VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 69.7 bits (163), Expect = 8e-13
Identities = 30/32 (93%), Positives = 31/32 (96%)
Frame = +1
Query: 1 VGDEAXSKRGILTLKYPIEHGIITNWDDMEKI 96
VGDEA SKRGILTLKYPIEHGI+TNWDDMEKI
Sbjct: 55 VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 64.1 bits (149), Expect = 4e-11
Identities = 27/29 (93%), Positives = 28/29 (96%)
Frame = +1
Query: 1 VGDEAXSKRGILTLKYPIEHGIITNWDDM 87
VGDEA SKRGILTLKYPIEHGI+TNWDDM
Sbjct: 55 VGDEAQSKRGILTLKYPIEHGIVTNWDDM 83
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 45.6 bits (103), Expect = 2e-05
Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 4/124 (3%)
Frame = +1
Query: 49 PIEHGIITNWDDMEKIWHHXFYXELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNS 228
PIE G + NWD ++IW F + V + LT+ A + ++I+F+ F
Sbjct: 62 PIERGYVVNWDTQQQIWEKTF-GSMDVEASTSRIALTDNNYLIPALPDVSSEILFDYFGF 120
Query: 229 PAMYVAIQAVLSLYASGRTT----GIXLDSGDGVSHTVPIYXGYALXHXILRLDLAGRDL 396
++ + L S + + +DSG + G + ++R+D+ G+ L
Sbjct: 121 TEVHKTSASTLVAKHSNKINNEKCAVVVDSGFSWTTVASFVNGMLIQDSVIRIDVGGKAL 180
Query: 397 TDYL 408
T+ L
Sbjct: 181 TNKL 184
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 45.6 bits (103), Expect = 2e-05
Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 4/124 (3%)
Frame = +1
Query: 49 PIEHGIITNWDDMEKIWHHXFYXELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNS 228
PIE G + NWD ++IW F + V + LT+ A + ++I+F+ F
Sbjct: 62 PIERGYVVNWDTQQQIWEKTF-GSMDVEASTSRIALTDNNYLIPALPDVSSEILFDYFGF 120
Query: 229 PAMYVAIQAVLSLYASGRTT----GIXLDSGDGVSHTVPIYXGYALXHXILRLDLAGRDL 396
++ + L S + + +DSG + G + ++R+D+ G+ L
Sbjct: 121 TEVHKTSASTLVAKHSNKINNEKCAVVVDSGFSWTTVASFVNGMLIQDSVIRIDVGGKAL 180
Query: 397 TDYL 408
T+ L
Sbjct: 181 TNKL 184
>U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical
protein F42C5.9 protein.
Length = 552
Score = 43.6 bits (98), Expect = 6e-05
Identities = 30/102 (29%), Positives = 48/102 (47%)
Frame = +1
Query: 118 ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIX 297
EL+V P ++ VLL+ P ++ QI E + + Q L LYA TTG+
Sbjct: 266 ELKVEPWKYKVLLSIPQNIPTVLIGELLQICLEDIKFQSAGITRQPSLILYAYDVTTGVV 325
Query: 298 LDSGDGVSHTVPIYXGYALXHXILRLDLAGRDLTDYLMXILT 423
+D G+ V + VP+ GY + I + + + D L L+
Sbjct: 326 VDIGERV-NIVPVIDGYVVESAICSIPYGSQQMGDSLRASLS 366
>U97193-7|AAK68163.1| 299|Caenorhabditis elegans Yeast sir related
protein 2.4 protein.
Length = 299
Score = 30.3 bits (65), Expect = 0.63
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
Frame = +1
Query: 67 ITNWDDMEKIWHHXFYXELRVAPEEHPVLLTEAPLNPKANREKMTQIMF-ETFNSPAMYV 243
+ + D + K W + L + + + PL+ K+ K T I + ET + +
Sbjct: 203 LNHLDRIRKAWKQTSHL-LCIGTSLEIIPMGSLPLDAKSKGIKTTTINYQETAHEKIVET 261
Query: 244 AIQA--VLSLYASGRTTGIXLDSGDGVSHTVPI 336
AI A L LY+ G+ +D GD + VPI
Sbjct: 262 AIHADVKLILYSLCNALGVNVDLGDDLPDEVPI 294
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 317 TPSPESSXIPVVRPEAYSESTAWMATYMAGEL 222
TP P SS +PVV P ++ T +Y+A L
Sbjct: 865 TPQPLSSTMPVVAPSTSTQPTPTTGSYLANTL 896
>AY349016-1|AAQ55496.1| 394|Caenorhabditis elegans NHR-41 protein.
Length = 394
Score = 27.5 bits (58), Expect = 4.4
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -3
Query: 426 LGEDXHEVVGQVATSQVQTEDGVGQSVTXVDGYG 325
+GED V+G V S T GVG S + D G
Sbjct: 75 IGEDEMTVIGLVPPSASPTSSGVGSSSSISDDSG 108
>AY349015-1|AAQ55495.1| 459|Caenorhabditis elegans NHR-41B protein.
Length = 459
Score = 27.5 bits (58), Expect = 4.4
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -3
Query: 426 LGEDXHEVVGQVATSQVQTEDGVGQSVTXVDGYG 325
+GED V+G V S T GVG S + D G
Sbjct: 172 IGEDEMTVIGLVPPSASPTSSGVGSSSSISDDSG 205
>AY349014-1|AAQ55494.1| 583|Caenorhabditis elegans NHR-41A protein.
Length = 583
Score = 27.5 bits (58), Expect = 4.4
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -3
Query: 426 LGEDXHEVVGQVATSQVQTEDGVGQSVTXVDGYG 325
+GED V+G V S T GVG S + D G
Sbjct: 296 IGEDEMTVIGLVPPSASPTSSGVGSSSSISDDSG 329
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,936,450
Number of Sequences: 27780
Number of extensions: 137266
Number of successful extensions: 524
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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