Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_L24
         (772 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08960.1 68414.m00996 cation exchanger, putative (CAX11) simi...    33   0.21 
At3g17780.1 68416.m02268 expressed protein                             31   1.1  
At1g48440.1 68414.m05415 expressed protein                             30   1.9  
At4g15180.1 68417.m02328 SET domain-containing protein contains ...    29   3.4  

>At1g08960.1 68414.m00996 cation exchanger, putative (CAX11) similar
           to sodium/calcium exchanger protein [Mus musculus]
           gi|13925661|gb|AAK49407; Ca2+:Cation Antiporter (CaCA)
           Family member PMID:11500563
          Length = 415

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +2

Query: 263 TEIAVVLLLTLPIASPSRWQKFFKSKFLAY 352
           T ++V+L LT+P  SPS W +F++S  + +
Sbjct: 168 TPVSVLLNLTIPKPSPSEWSRFYRSANIVF 197


>At3g17780.1 68416.m02268 expressed protein
          Length = 129

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +2

Query: 224 MSLQWTIIATFLYTEIAVVLLLTLP 298
           M+LQW I++  +  E+A+ ++LTLP
Sbjct: 1   MALQWLILSYVVAAEVAIAVILTLP 25


>At1g48440.1 68414.m05415 expressed protein
          Length = 129

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +2

Query: 224 MSLQWTIIATFLYTEIAVVLLLTLP 298
           M+LQW I++  +  E+ + L+LTLP
Sbjct: 1   MALQWLILSYVVAVEVVITLVLTLP 25


>At4g15180.1 68417.m02328 SET domain-containing protein contains
           Pfam profile PF00856: SET domain
          Length = 2326

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 679 RHWRGTKQERNRRS-EDPNFEFGKGTF 756
           ++W+G K+ER  RS  DP+ E  KG F
Sbjct: 212 KNWKGGKEEREFRSWRDPSDEIEKGEF 238


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,979,896
Number of Sequences: 28952
Number of extensions: 287604
Number of successful extensions: 696
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)