Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_L20
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 189 1e-48
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 189 1e-48
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 188 5e-48
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila... 185 2e-47
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila... 185 2e-47
At1g43090.1 68414.m04964 glycoside hydrolase family 28 protein /... 30 1.9
At1g43080.1 68414.m04963 glycoside hydrolase family 28 protein /... 30 1.9
At1g11130.1 68414.m01274 leucine-rich repeat family protein / pr... 29 3.3
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c... 29 4.4
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c... 29 4.4
At1g43100.1 68414.m04965 glycoside hydrolase family 28 protein /... 28 5.8
At1g52960.1 68414.m05990 hypothetical protein very low similarit... 28 7.6
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 189 bits (461), Expect = 1e-48
Identities = 93/185 (50%), Positives = 136/185 (73%), Gaps = 2/185 (1%)
Frame = +2
Query: 155 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 328
KI K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 329 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 508
KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+RTLTSV
Sbjct: 67 FRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSV 122
Query: 509 YDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREV 688
++A+LED+ +PAEIVGKR R +LDG++++KV LD + E+K++T VY+KLTG++V
Sbjct: 123 HEAMLEDVAYPAEIVGKRTRYRLDGTKIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKDV 182
Query: 689 TFEFP 703
FE+P
Sbjct: 183 VFEYP 187
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 189 bits (461), Expect = 1e-48
Identities = 93/185 (50%), Positives = 136/185 (73%), Gaps = 2/185 (1%)
Frame = +2
Query: 155 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 328
KI K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 329 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 508
KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+RTLTSV
Sbjct: 67 FRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSV 122
Query: 509 YDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREV 688
++A+LED+ +PAEIVGKR R +LDG++++KV LD + E+K++T VY+KLTG++V
Sbjct: 123 HEAMLEDVAYPAEIVGKRTRYRLDGTKIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKDV 182
Query: 689 TFEFP 703
FE+P
Sbjct: 183 VFEYP 187
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 188 bits (457), Expect = 5e-48
Identities = 95/185 (51%), Positives = 134/185 (72%), Gaps = 2/185 (1%)
Frame = +2
Query: 155 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 328
KI K AE E ++QAL +LE TN +LK++L++LYI +A +++ N+K+++IYVP
Sbjct: 7 KIKKDKNAEPTECEEQVAQALFDLENTNQELKSELKDLYINQAVHMDISGNRKAVVIYVP 66
Query: 329 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 508
KAF+KI RLVRELEKKFSGK V+FV R+I+ P V +RPR+RTLTSV
Sbjct: 67 FRLRKAFRKIHPRLVRELEKKFSGKDVIFVTTRRIMRPPKKGAAV----QRPRNRTLTSV 122
Query: 509 YDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREV 688
++A+LED+ FPAEIVGKR R +LDGS+++KV LD ++ E+K++T VY+KLTG++V
Sbjct: 123 HEAMLEDVAFPAEIVGKRTRYRLDGSKIMKVFLDAKEKNNTEYKLETMVGVYRKLTGKDV 182
Query: 689 TFEFP 703
FE+P
Sbjct: 183 VFEYP 187
>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 185 bits (451), Expect = 2e-47
Identities = 91/185 (49%), Positives = 134/185 (72%), Gaps = 2/185 (1%)
Frame = +2
Query: 155 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 328
KI K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 329 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 508
KA++KI +RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+RTLTSV
Sbjct: 67 YRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSV 122
Query: 509 YDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREV 688
++AIL+D+V PAEIVGKR R +LDG++++KV LD ++ E+KV+ F +VYKKLTG++V
Sbjct: 123 HEAILDDVVLPAEIVGKRTRYRLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTGKDV 182
Query: 689 TFEFP 703
FEFP
Sbjct: 183 VFEFP 187
>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 185 bits (451), Expect = 2e-47
Identities = 91/185 (49%), Positives = 134/185 (72%), Gaps = 2/185 (1%)
Frame = +2
Query: 155 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 328
KI K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 329 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 508
KA++KI +RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+RTLTSV
Sbjct: 67 YRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSV 122
Query: 509 YDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREV 688
++AIL+D+V PAEIVGKR R +LDG++++KV LD ++ E+KV+ F +VYKKLTG++V
Sbjct: 123 HEAILDDVVLPAEIVGKRTRYRLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTGKDV 182
Query: 689 TFEFP 703
FEFP
Sbjct: 183 VFEFP 187
>At1g43090.1 68414.m04964 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
SP|P35339 Exopolygalacturonase precursor (EC 3.2.1.67)
(Pectinase) (Galacturan 1,4-alpha-galacturonidase) {Zea
mays}; contains Pfam profile PF00295: Glycosyl
hydrolases family 28 (polygalacturonases)
Length = 444
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = -3
Query: 271 NVKLPKLGFEVGVGFEFDQRLRDRGLEGIRLSTARFDDLRTHRSNVINIAIT 116
N PKL +G F + R++D + + F+ HR N+ + IT
Sbjct: 144 NTNCPKLAMTMGFAFVNNSRIKD--ITSLNSKMGHFNFFSVHRFNITGVTIT 193
>At1g43080.1 68414.m04963 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
SP|P35339 Exopolygalacturonase precursor (EC 3.2.1.67)
(Pectinase) (Galacturan 1,4-alpha-galacturonidase) {Zea
mays}; contains Pfam profile PF00295: Glycosyl
hydrolases family 28 (polygalacturonases)
Length = 404
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = -3
Query: 271 NVKLPKLGFEVGVGFEFDQRLRDRGLEGIRLSTARFDDLRTHRSNVINIAIT 116
N PKL +G F + R++D + + F+ HR N+ + IT
Sbjct: 144 NTNCPKLAMTMGFAFVNNSRIKD--ITSLNSKMGHFNFFSVHRFNITGVTIT 193
>At1g11130.1 68414.m01274 leucine-rich repeat family protein /
protein kinase family protein contains leucine
rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to leucine-rich
repeat transmembrane protein kinase 2 [Zea mays]
gi|3360291|gb|AAC27895
Length = 768
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = -1
Query: 588 CEPSNLTLMRLPTISAGKTKSSRIASYTEVNVLE 487
C+ SN+T +R+P + G S +A ++ + V++
Sbjct: 66 CDSSNITEIRIPGMKVGGGLSDTLADFSSIQVMD 99
>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
Length = 340
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 475 KEATLKDIDLCVRCYPRGLG 534
+E++LK CVRCYP G G
Sbjct: 181 RESSLKYQTRCVRCYPNGTG 200
>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
Length = 339
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 475 KEATLKDIDLCVRCYPRGLG 534
+E++LK CVRCYP G G
Sbjct: 180 RESSLKYQTRCVRCYPNGTG 199
>At1g43100.1 68414.m04965 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
SP|P35339 Exopolygalacturonase precursor (EC 3.2.1.67)
(Pectinase) (Galacturan 1,4-alpha-galacturonidase) {Zea
mays}; contains Pfam profile PF00295: Glycosyl
hydrolases family 28 (polygalacturonases)
Length = 444
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = -3
Query: 271 NVKLPKLGFEVGVGFEFDQRLRDRGLEGIRLSTARFDDLRTHRSNVINIAIT 116
N P+L +G F + R++D + + F+ HR N+ + IT
Sbjct: 144 NTNCPELAMTMGFAFVNNSRIKD--ITSLNSKMGHFNFFSVHRFNITGVTIT 193
>At1g52960.1 68414.m05990 hypothetical protein very low similarity
to SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 996
Score = 27.9 bits (59), Expect = 7.6
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Frame = +2
Query: 290 ELHNKKSIIIY--VPMPKLKAFQKIQIRLVREL-----EKKFSGKHVVFVGD-RKILP 439
EL + ++II+ PM F+ + R +R++ +K F GK +VF GD R++LP
Sbjct: 640 ELVKEANLIIWDETPMMSKHCFESLD-RTLRDIMNNPGDKPFGGKGIVFGGDFRQVLP 696
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,286,198
Number of Sequences: 28952
Number of extensions: 307352
Number of successful extensions: 848
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -