Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_L19
         (842 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58242| Best HMM Match : PUCC (HMM E-Value=0.14)                     29   4.7  
SB_32230| Best HMM Match : Keratin_B2 (HMM E-Value=0.22)               24   7.6  
SB_49421| Best HMM Match : 7tm_1 (HMM E-Value=3e-07)                   28   8.2  

>SB_58242| Best HMM Match : PUCC (HMM E-Value=0.14)
          Length = 784

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 555 IQVSIFKFIVRKKGPYFSFPITLCFNRDNSFPVHTTSV 668
           IQ S+    ++  GPY+ +       R  S PVHTTS+
Sbjct: 168 IQHSVRTTSIKHPGPYYRYTAPRSILRVYSTPVHTTSI 205


>SB_32230| Best HMM Match : Keratin_B2 (HMM E-Value=0.22)
          Length = 254

 Score = 24.2 bits (50), Expect(2) = 7.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 752 YFEYS*NGCPTLTETHYC 805
           Y EY     PT+ +THYC
Sbjct: 130 YCEYPLFRTPTIPDTHYC 147



 Score = 22.6 bits (46), Expect(2) = 7.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 779 PTLTETHYCFXARNYPII 832
           PT+ +THYC     YP++
Sbjct: 171 PTIADTHYC----KYPLL 184


>SB_49421| Best HMM Match : 7tm_1 (HMM E-Value=3e-07)
          Length = 265

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -1

Query: 230 IWALNWVTTNVLVILQTSAMIITVDLLNERMAHQQPQTKTDSE 102
           IW+ N +  + L ++  S  II V++  +R+    P T+ D E
Sbjct: 153 IWSRNVLAFSSLAVICCSYFIILVNVRKQRIKLSHPSTRRDRE 195


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,278,909
Number of Sequences: 59808
Number of extensions: 485394
Number of successful extensions: 819
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)