Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_L19
         (842 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70854-10|AAB09155.1|  296|Caenorhabditis elegans Hypothetical p...    31   1.4  
Z92837-3|CAB07402.3|  502|Caenorhabditis elegans Hypothetical pr...    29   4.1  

>U70854-10|AAB09155.1|  296|Caenorhabditis elegans Hypothetical
           protein F38A5.11 protein.
          Length = 296

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +3

Query: 714 KPFALMLVLQAFFISSIVKTAAPPLP 791
           +P  ++L+LQAF   +I+++ APP P
Sbjct: 2   RPIHIILLLQAFICVTIIQSGAPPFP 27


>Z92837-3|CAB07402.3|  502|Caenorhabditis elegans Hypothetical
           protein R03E1.3 protein.
          Length = 502

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 22/71 (30%), Positives = 36/71 (50%)
 Frame = +3

Query: 570 FKFIVRKKGPYFSFPITLCFNRDNSFPVHTTSVIL*VFSRIPTNYLTPKPFALMLVLQAF 749
           F  I+R+  PYFS  I         FP+  TS+IL +   I T+ +      L ++LQ++
Sbjct: 249 FGIILRRHLPYFSLSIL--------FPMAGTSLILLLCFWIETHSICFFTIMLNIILQSY 300

Query: 750 FISSIVKTAAP 782
           + SS++    P
Sbjct: 301 YGSSLLAKMPP 311


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,467,317
Number of Sequences: 27780
Number of extensions: 386352
Number of successful extensions: 777
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)