Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_L18
(772 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g26667.2 68418.m03158 uridylate kinase / uridine monophosphat... 170 8e-43
At5g26667.1 68418.m03157 uridylate kinase / uridine monophosphat... 170 8e-43
At3g60180.2 68416.m06721 uridylate kinase, putative / uridine mo... 147 6e-36
At3g60180.1 68416.m06720 uridylate kinase, putative / uridine mo... 147 6e-36
At4g25280.1 68417.m03636 adenylate kinase family protein contain... 140 1e-33
At5g47840.1 68418.m05911 adenylate kinase, chloroplast, putative... 133 1e-31
At5g35170.1 68418.m04168 adenylate kinase family protein contain... 123 1e-28
At5g63400.1 68418.m07958 adenylate kinase identical to adenylate... 86 2e-17
At2g37250.1 68415.m04570 adenylate kinase family protein contain... 86 3e-17
At5g50370.1 68418.m06238 adenylate kinase, putative similar to a... 83 1e-16
At2g39270.1 68415.m04822 adenylate kinase family protein contain... 82 5e-16
At3g01820.1 68416.m00124 adenylate kinase family protein contain... 54 1e-07
At1g27900.1 68414.m03419 RNA helicase, putative similar to SP|Q1... 31 0.64
At5g01310.1 68418.m00043 basic helix-loop-helix (bHLH) family pr... 31 1.1
At2g39730.3 68415.m04879 ribulose bisphosphate carboxylase/oxyge... 30 1.5
At2g39730.2 68415.m04878 ribulose bisphosphate carboxylase/oxyge... 30 1.5
At2g39730.1 68415.m04877 ribulose bisphosphate carboxylase/oxyge... 30 1.5
At4g25120.1 68417.m03614 UvrD/REP helicase family protein contai... 29 3.4
At2g35340.1 68415.m04333 RNA helicase, putative similar to ATP-d... 29 3.4
At1g07270.1 68414.m00773 cell division control protein CDC6b, pu... 29 4.5
At1g32490.1 68414.m04009 RNA helicase, putative similar to ATP-d... 28 5.9
>At5g26667.2 68418.m03158 uridylate kinase / uridine monophosphate
kinase / UMP kinase (PYR6) identical to uridylate kinase
/ UMP/CMP kinase SP:O04905 from [Arabidopsis thaliana]
Length = 202
Score = 170 bits (414), Expect = 8e-43
Identities = 88/191 (46%), Positives = 129/191 (67%), Gaps = 5/191 (2%)
Frame = +1
Query: 118 TSKKP-IVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTAIMER 294
+ KKP +++VLGGPGSGKGTQC IV YG+THLS GDLLRAE+KSGSE + +++
Sbjct: 10 SGKKPTVIFVLGGPGSGKGTQCAYIVEHYGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE 69
Query: 295 GELVPNEIVLDLLKEAILARAEESKGFLIDGYPREKSQGIAFEE--NIAPVSVIIYFEAS 468
G++VP+E+ + LL++AI + FLIDG+PR + AFE+ I P +++F+
Sbjct: 70 GKIVPSEVTIKLLQKAIQENGNDK--FLIDGFPRNEENRAAFEKVTEIEP-KFVLFFDCP 126
Query: 469 SETLTQRLLGRAASSGRADDNEETIKLRLKTFLDNNDLVLAQY--PDKLRRINAERPVDE 642
E + +RLLGR + GR DDN ETI+ R K FL+++ V+ Y K+R+INA +P++
Sbjct: 127 EEEMEKRLLGR--NQGREDDNIETIRKRFKVFLESSLPVIHYYEAKGKVRKINAAKPIEA 184
Query: 643 IFAEVQSILDP 675
+F EV++I P
Sbjct: 185 VFEEVKAIFSP 195
>At5g26667.1 68418.m03157 uridylate kinase / uridine monophosphate
kinase / UMP kinase (PYR6) identical to uridylate kinase
/ UMP/CMP kinase SP:O04905 from [Arabidopsis thaliana]
Length = 208
Score = 170 bits (414), Expect = 8e-43
Identities = 88/191 (46%), Positives = 129/191 (67%), Gaps = 5/191 (2%)
Frame = +1
Query: 118 TSKKP-IVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTAIMER 294
+ KKP +++VLGGPGSGKGTQC IV YG+THLS GDLLRAE+KSGSE + +++
Sbjct: 10 SGKKPTVIFVLGGPGSGKGTQCAYIVEHYGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE 69
Query: 295 GELVPNEIVLDLLKEAILARAEESKGFLIDGYPREKSQGIAFEE--NIAPVSVIIYFEAS 468
G++VP+E+ + LL++AI + FLIDG+PR + AFE+ I P +++F+
Sbjct: 70 GKIVPSEVTIKLLQKAIQENGNDK--FLIDGFPRNEENRAAFEKVTEIEP-KFVLFFDCP 126
Query: 469 SETLTQRLLGRAASSGRADDNEETIKLRLKTFLDNNDLVLAQY--PDKLRRINAERPVDE 642
E + +RLLGR + GR DDN ETI+ R K FL+++ V+ Y K+R+INA +P++
Sbjct: 127 EEEMEKRLLGR--NQGREDDNIETIRKRFKVFLESSLPVIHYYEAKGKVRKINAAKPIEA 184
Query: 643 IFAEVQSILDP 675
+F EV++I P
Sbjct: 185 VFEEVKAIFSP 195
>At3g60180.2 68416.m06721 uridylate kinase, putative / uridine
monophosphate kinase, putative / UMP kinase, putative
similar to uridylate kinase (EC 2.7.4.-) (UK) (Uridine
monophosphate kinase) (UMP kinase) (UMP/CMP kinase)
(Swiss-Prot:O04905) [Arabidopsis thaliana]
Length = 204
Score = 147 bits (357), Expect = 6e-36
Identities = 77/183 (42%), Positives = 117/183 (63%), Gaps = 4/183 (2%)
Frame = +1
Query: 124 KKPIVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTAIMERGEL 303
K +V+VLGGPGSGKGTQC +V + +TH S GDLLRAE+KSGSE + +++ G +
Sbjct: 20 KSTVVFVLGGPGSGKGTQCANVVKHFSYTHFSAGDLLRAEIKSGSEFGAMIQSMIAEGRI 79
Query: 304 VPNEIVLDLLKEAILARAEESKGFLIDGYPREKSQGIAFEENIAPV--SVIIYFEASSET 477
VP+EI + LL +A+ + FLIDG+PR + F EN+A + + +++F+ E
Sbjct: 80 VPSEITVKLLCKAMEESGNDK--FLIDGFPRNEENRNVF-ENVARIEPAFVLFFDCPEEE 136
Query: 478 LTQRLLGRAASSGRADDNEETIKLRLKTFLDNNDLVLAQYPD--KLRRINAERPVDEIFA 651
L +R++ R + GR DDN ETIK R K F+++ +++ Y KLR+INA + +E+F
Sbjct: 137 LERRIMSR--NQGREDDNIETIKKRFKVFVESTLPIISYYESKGKLRKINAAKSSEEVFE 194
Query: 652 EVQ 660
V+
Sbjct: 195 AVR 197
>At3g60180.1 68416.m06720 uridylate kinase, putative / uridine
monophosphate kinase, putative / UMP kinase, putative
similar to uridylate kinase (EC 2.7.4.-) (UK) (Uridine
monophosphate kinase) (UMP kinase) (UMP/CMP kinase)
(Swiss-Prot:O04905) [Arabidopsis thaliana]
Length = 204
Score = 147 bits (357), Expect = 6e-36
Identities = 77/183 (42%), Positives = 117/183 (63%), Gaps = 4/183 (2%)
Frame = +1
Query: 124 KKPIVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTAIMERGEL 303
K +V+VLGGPGSGKGTQC +V + +TH S GDLLRAE+KSGSE + +++ G +
Sbjct: 20 KSTVVFVLGGPGSGKGTQCANVVKHFSYTHFSAGDLLRAEIKSGSEFGAMIQSMIAEGRI 79
Query: 304 VPNEIVLDLLKEAILARAEESKGFLIDGYPREKSQGIAFEENIAPV--SVIIYFEASSET 477
VP+EI + LL +A+ + FLIDG+PR + F EN+A + + +++F+ E
Sbjct: 80 VPSEITVKLLCKAMEESGNDK--FLIDGFPRNEENRNVF-ENVARIEPAFVLFFDCPEEE 136
Query: 478 LTQRLLGRAASSGRADDNEETIKLRLKTFLDNNDLVLAQYPD--KLRRINAERPVDEIFA 651
L +R++ R + GR DDN ETIK R K F+++ +++ Y KLR+INA + +E+F
Sbjct: 137 LERRIMSR--NQGREDDNIETIKKRFKVFVESTLPIISYYESKGKLRKINAAKSSEEVFE 194
Query: 652 EVQ 660
V+
Sbjct: 195 AVR 197
>At4g25280.1 68417.m03636 adenylate kinase family protein contains
Pfam profile: PF00406 adenylate kinase
Length = 249
Score = 140 bits (338), Expect = 1e-33
Identities = 76/183 (41%), Positives = 114/183 (62%), Gaps = 3/183 (1%)
Frame = +1
Query: 133 IVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTAIMERGELVPN 312
I +VLGGPGSGKGTQC+KIV +G HLS GDLLR E+ +E + +++ G++VP+
Sbjct: 45 ITFVLGGPGSGKGTQCEKIVETFGLQHLSAGDLLRREIAMHTENGAMILNLIKDGKIVPS 104
Query: 313 EIVLDLLKEAILARAEESKGFLIDGYPREKSQGIAFEENI-APVSVIIYFEASSETLTQR 489
E+ + L+++ + + +++ FLIDG+PR + +AFE I A V+++F+ E + +R
Sbjct: 105 EVTVKLIQKEL--ESSDNRKFLIDGFPRTEENRVAFERIIRADPDVVLFFDCPEEEMVKR 162
Query: 490 LLGRAASSGRADDNEETIKLRLKTFLDNNDLVLAQYPD--KLRRINAERPVDEIFAEVQS 663
+L R + GR DDN T+K RLK F N V+ Y + KL INA VD+IF V
Sbjct: 163 VLNR--NQGRIDDNITTMKKRLKIFNALNRPVIDYYKNKGKLYTINAVGTVDDIFQHVLP 220
Query: 664 ILD 672
I +
Sbjct: 221 IFN 223
>At5g47840.1 68418.m05911 adenylate kinase, chloroplast, putative /
ATP-AMP transphosphorylase, putative similar to
SP|P43188 Adenylate kinase, chloroplast (EC 2.7.4.3)
(ATP-AMP transphosphorylase) {Zea mays}; contains Pfam
profile PF00406: Adenylate kinase
Length = 283
Score = 133 bits (322), Expect = 1e-31
Identities = 79/205 (38%), Positives = 108/205 (52%), Gaps = 23/205 (11%)
Frame = +1
Query: 136 VWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTAIMERGELVPNE 315
+ + G P SGKGTQC+ I KYG H+S GDLLRAE+ SGSE + ME+G+LVP+E
Sbjct: 67 IMISGAPASGKGTQCELITHKYGLVHISAGDLLRAEIASGSENGRRAKEHMEKGQLVPDE 126
Query: 316 IVLDLLKEAILARAEESKGFLIDGYPREKSQGIAFEENIAPVSVIIYFEASSETLTQRLL 495
IV+ ++K+ + E KG+L+DGYPR SQ A + + I E E L +R++
Sbjct: 127 IVVMMVKDRLSQTDSEQKGWLLDGYPRSASQATALKGFGFQPDLFIVLEVPEEILIERVV 186
Query: 496 GRAAS-----------------------SGRADDNEETIKLRLKTFLDNNDLVLAQYPDK 606
GR + R DD EE KLRLKT N VL+ Y D
Sbjct: 187 GRRLDPVTGKIYHLKYSPPETEEIAVRLTQRFDDTEEKAKLRLKTHNQNVSDVLSMYDDI 246
Query: 607 LRRINAERPVDEIFAEVQSILDPLV 681
+I R +E+FA++ S L L+
Sbjct: 247 TIKIEGNRSKEEVFAQIDSSLSELL 271
>At5g35170.1 68418.m04168 adenylate kinase family protein contains
Pfam profile: PF00406 adenylate kinase
Length = 588
Score = 123 bits (297), Expect = 1e-28
Identities = 71/205 (34%), Positives = 110/205 (53%), Gaps = 24/205 (11%)
Frame = +1
Query: 136 VWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTAIMERGELVPNE 315
V + G P SGKGTQC+ IV K+G H+STGDLLRAEV SG++ K M G LVP+E
Sbjct: 82 VMISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSSGTDIGKRAKEFMNSGSLVPDE 141
Query: 316 IVLDLLKEAILARAEESKGFLIDGYPREKSQGIAFEE-NIAPVSVIIYFEASSETLTQRL 492
IV+ ++ + + G+L+DG+PR +Q + ++ N+ P + I + E L R
Sbjct: 142 IVIAMVAGRLSREDAKEHGWLLDGFPRSFAQAQSLDKLNVKP-DIFILLDVPDEILIDRC 200
Query: 493 LGR-----------------------AASSGRADDNEETIKLRLKTFLDNNDLVLAQYPD 603
+GR A R DD EE +K RL+ + N++ +++ Y D
Sbjct: 201 VGRRLDPVTGKIYHIKNYPPESDEIKARLVTRPDDTEEKVKARLQIYKQNSEAIISAYSD 260
Query: 604 KLRRINAERPVDEIFAEVQSILDPL 678
+ +I+A RP + +F E Q++L +
Sbjct: 261 VMVKIDANRPKEVVFEETQTLLSQI 285
>At5g63400.1 68418.m07958 adenylate kinase identical to adenylate
kinase (ATP-AMP transphosphorylase) [Arabidopsis
thaliana] SWISS-PROT:O82514
Length = 246
Score = 86.2 bits (204), Expect = 2e-17
Identities = 66/208 (31%), Positives = 100/208 (48%), Gaps = 33/208 (15%)
Frame = +1
Query: 145 LGGPGSGKGTQCDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTAIMERGELVPNEIVL 324
+G PGSGKGTQ + +Y HLSTGD+LRA V S + ME+GELV +++V+
Sbjct: 39 IGPPGSGKGTQSPVVKDEYCLCHLSTGDMLRAAVASKTPLGVKAKEAMEKGELVSDDLVV 98
Query: 325 DLLKEAILARAEESKGFLIDGYPREKSQGIAFEENI----APVSVIIYFEASSETLTQRL 492
++ EA + + + KGF++DG+PR +Q +E + + ++ F L +R+
Sbjct: 99 GIIDEA-MNKPKCQKGFILDGFPRTVTQAEKLDEMLKRRGTEIDKVLNFAIDDAILEERI 157
Query: 493 LGR--AASSGRA-------------------------DDNEETIKLRLKTFLDNNDLVLA 591
GR SSGR+ DDN + +K RL F V+
Sbjct: 158 TGRWIHPSSGRSYHTKFAPPKTPGVDDITGEPLIQRKDDNADVLKSRLAAFHSQTQPVID 217
Query: 592 QYPDK--LRRINAERPVDEIFAEVQSIL 669
Y K L I AE+ E+ +EV+ L
Sbjct: 218 YYAKKAVLTNIQAEKAPQEVTSEVKKAL 245
>At2g37250.1 68415.m04570 adenylate kinase family protein contains
Pfam profile: PF00406 adenylate kinase
Length = 284
Score = 85.8 bits (203), Expect = 3e-17
Identities = 47/140 (33%), Positives = 79/140 (56%), Gaps = 2/140 (1%)
Frame = +1
Query: 100 KMAPIDTSKKPIVWV-LGGPGSGKGTQCDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCL 276
++AP D + + WV LG PG GKGT ++ G H++TGDL+R E+ S ++ L
Sbjct: 44 RVAPKDRN---VQWVFLGCPGVGKGTYASRLSTLLGVPHIATGDLVREELASSGPLSQKL 100
Query: 277 TAIMERGELVPNEIVLDLLKEAILA-RAEESKGFLIDGYPREKSQGIAFEENIAPVSVII 453
+ I+ +G+LV +EI++DLL + + A A GF++DG+PR Q + + + +++
Sbjct: 101 SEIVNQGKLVSDEIIVDLLSKRLEAGEARGESGFILDGFPRTMRQAEILGD-VTDIDLVV 159
Query: 454 YFEASSETLTQRLLGRAASS 513
+ E L + LGR S
Sbjct: 160 NLKLPEEVLVDKCLGRRTCS 179
>At5g50370.1 68418.m06238 adenylate kinase, putative similar to
adenylate kinase (ATP-AMP transphosphorylase)
[Arabidopsis thaliana] SWISS-PROT:O82514
Length = 248
Score = 83.4 bits (197), Expect = 1e-16
Identities = 52/150 (34%), Positives = 84/150 (56%), Gaps = 6/150 (4%)
Frame = +1
Query: 91 IL*KMAPIDTSKKPIVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLRAEVKSGSERAK 270
+L +M K +V++ G PGSGKGTQ I ++ HLSTGD+LRA V + +
Sbjct: 23 LLRRMKCASKPDKRLVFI-GPPGSGKGTQSPVIKDEFCLCHLSTGDMLRAAVAAKTPLGV 81
Query: 271 CLTAIMERGELVPNEIVLDLLKEAILARAEESKGFLIDGYPREKSQGIAFEENI----AP 438
M++GELV +++V+ ++ EA + R + KGF++DG+PR +Q +E + A
Sbjct: 82 KAKEAMDKGELVSDDLVVGIMDEA-MNRPKCQKGFILDGFPRTVTQAEKLDEMLNRRGAQ 140
Query: 439 VSVIIYFEASSETLTQRLLGR--AASSGRA 522
+ ++ F L +R+ GR SSGR+
Sbjct: 141 IDKVLNFAIDDSVLEERITGRWIHPSSGRS 170
>At2g39270.1 68415.m04822 adenylate kinase family protein contains
Pfam profile: PF00406: adenylate kinase
Length = 295
Score = 81.8 bits (193), Expect = 5e-16
Identities = 42/127 (33%), Positives = 72/127 (56%), Gaps = 2/127 (1%)
Frame = +1
Query: 139 WV-LGGPGSGKGTQCDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTAIMERGELVPNE 315
WV LG PG GKGT ++ + G H++TGDL+R E+ S + L ++ G+LVP+E
Sbjct: 67 WVFLGCPGVGKGTYASRLSSLLGVPHIATGDLVREELSSSGLLSSQLKELVNHGKLVPDE 126
Query: 316 IVLDLLKEAILARAEESK-GFLIDGYPREKSQGIAFEENIAPVSVIIYFEASSETLTQRL 492
++ LL + + A ++ + G+++DG+PR +Q E + + ++I + E L +
Sbjct: 127 FIISLLSKRLQAGKDKGESGYILDGFPRTVTQA-EILEGVTNIDLVINLKLREEALLAKC 185
Query: 493 LGRAASS 513
LGR S
Sbjct: 186 LGRRICS 192
>At3g01820.1 68416.m00124 adenylate kinase family protein contains
Pfam profile: PF00406 adenylate kinase
Length = 263
Score = 54.0 bits (124), Expect = 1e-07
Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Frame = +1
Query: 133 IVWVL-GGPGSGKGTQCDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTAIMERGELVP 309
+ WVL G PG+ + +++ H+S G L+R E+ S K + + + +LVP
Sbjct: 63 VQWVLMGAPGAWRHVFAERLSKLLEVPHISMGSLVRQELNPRSSLYKEIASAVNERKLVP 122
Query: 310 NEIVLDLLKEAI-LARAEESKGFLIDGYPREKSQGIAFEENIAPVSVIIYFEASSETLTQ 486
+V LL + + A GF++ G PR + Q ++ IA + +++ + S + L
Sbjct: 123 KSVVFALLSKRLEEGYARGETGFILHGIPRTRFQAETLDQ-IAQIDLVVNLKCSEDHLVN 181
Query: 487 R 489
R
Sbjct: 182 R 182
>At1g27900.1 68414.m03419 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 700
Score = 31.5 bits (68), Expect = 0.64
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +1
Query: 124 KKPIVWVLGGPGSGKGTQCDKIVAKYGFT 210
K +V ++G GSGK TQ +I+ ++G+T
Sbjct: 19 KNSVVVIIGETGSGKSTQLSQILHRHGYT 47
>At5g01310.1 68418.m00043 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain, weak hit to PF01661: Appr-1-p
processing enzyme family
Length = 912
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 115 DTSKKPIVWVLGGPGSGKGTQCD 183
D +K+ +V ++G PGSGK T CD
Sbjct: 223 DKAKQIVVLLIGPPGSGKSTFCD 245
>At2g39730.3 68415.m04879 ribulose bisphosphate
carboxylase/oxygenase activase / RuBisCO activase
identical to SWISS-PROT:P10896 ribulose bisphosphate
carboxylase/oxygenase activase, chloroplast precursor
(RuBisCO activase, RA)[Arabidopsis thaliana]
Length = 441
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +1
Query: 133 IVWVLGGPGSGKGTQCDKIVAKYGFT--HLSTGDL 231
I+ + GG G GK QC+ ++AK G +S G+L
Sbjct: 160 ILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGEL 194
>At2g39730.2 68415.m04878 ribulose bisphosphate
carboxylase/oxygenase activase / RuBisCO activase
identical to SWISS-PROT:P10896 ribulose bisphosphate
carboxylase/oxygenase activase, chloroplast precursor
(RuBisCO activase, RA)[Arabidopsis thaliana]
Length = 446
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +1
Query: 133 IVWVLGGPGSGKGTQCDKIVAKYGFT--HLSTGDL 231
I+ + GG G GK QC+ ++AK G +S G+L
Sbjct: 160 ILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGEL 194
>At2g39730.1 68415.m04877 ribulose bisphosphate
carboxylase/oxygenase activase / RuBisCO activase
identical to SWISS-PROT:P10896 ribulose bisphosphate
carboxylase/oxygenase activase, chloroplast precursor
(RuBisCO activase, RA)[Arabidopsis thaliana]
Length = 474
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +1
Query: 133 IVWVLGGPGSGKGTQCDKIVAKYGFT--HLSTGDL 231
I+ + GG G GK QC+ ++AK G +S G+L
Sbjct: 160 ILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGEL 194
>At4g25120.1 68417.m03614 UvrD/REP helicase family protein contains
Pfam PF00580: UvrD/REP helicase
Length = 1122
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 142 VLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLRAEVKS-GSERAKCLT 279
V+ GPGSGKG I+A FT +T ++ KS G + AK +T
Sbjct: 265 VIAGPGSGKGLLPSNILA-MTFTKAATSEMRERIGKSAGKKAAKDIT 310
>At2g35340.1 68415.m04333 RNA helicase, putative similar to
ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1110
Score = 29.1 bits (62), Expect = 3.4
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 1/131 (0%)
Frame = +1
Query: 133 IVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTAIMERGELVPN 312
++ ++G GSGK TQ + + + G+T L G + + + + + E G + +
Sbjct: 488 VLIIVGETGSGKTTQIPQYLHEAGYTKL--GKVGCTQPRRVAAMSVAARVAQEMGGKLGH 545
Query: 313 EIVLDLLKEAILARAEESKGFLIDGYPREKSQGIAFEENIAPVSVIIYFEASSETL-TQR 489
E+ + E + K ++ DG + G E ++ SVII EA TL T
Sbjct: 546 EVGYSIRFEDCTSEKTILK-YMTDGMLLRELLG---EPDLGSYSVIIVDEAHERTLRTDI 601
Query: 490 LLGRAASSGRA 522
L G RA
Sbjct: 602 LFGLVKDIARA 612
>At1g07270.1 68414.m00773 cell division control protein CDC6b,
putative (CDC6b) identical to CDC6b protein
(GI:18056482) {Arabidopsis thaliana}; contains Prosite
PS00017: ATP/GTP-binding site motif A (P-loop);
identical to cDNA CDC6b GI:18056481
Length = 505
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Frame = +1
Query: 112 IDTSKKPIVWVLGGPGSGKGTQCDKIVAKYGFTHLSTG----DLLRAEVKSGSERAKCLT 279
ID K +++ G PG+GK +K+V + G G D L S S+ +
Sbjct: 144 IDQQKAGSLYICGCPGTGKSLSMEKVVQQVGDWSTQAGLPPVDTLSVNCTSLSKTTDIFS 203
Query: 280 AIMERGELVPNE 315
I+ GE+ P +
Sbjct: 204 KIL--GEIKPGK 213
>At1g32490.1 68414.m04009 RNA helicase, putative similar to
ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1044
Score = 28.3 bits (60), Expect = 5.9
Identities = 28/121 (23%), Positives = 54/121 (44%)
Frame = +1
Query: 133 IVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTAIMERGELVPN 312
++ ++G GSGK TQ + + + G+T G + + + + + E G + +
Sbjct: 422 VLVIVGDTGSGKTTQIPQYLHEAGYT--KRGKVGCTQPRRVAAMSVAARVAQEMGVKLGH 479
Query: 313 EIVLDLLKEAILARAEESKGFLIDGYPREKSQGIAFEENIAPVSVIIYFEASSETLTQRL 492
E+ + E + K ++ DG + G E ++A SV+I EA TL+ +
Sbjct: 480 EVGYSIRFEDCTSDKTVLK-YMTDGMLLRELLG---EPDLASYSVVIVDEAHERTLSTDI 535
Query: 493 L 495
L
Sbjct: 536 L 536
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,478,473
Number of Sequences: 28952
Number of extensions: 348279
Number of successful extensions: 1078
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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