Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_L14
         (351 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0057 + 476172-476283,476337-476449,476532-476634,477089-47...    27   5.5  
01_06_0357 - 28668894-28669238,28669510-28669537,28669578-286696...    26   9.6  
01_01_1106 + 8750597-8754031                                           26   9.6  

>03_01_0057 +
           476172-476283,476337-476449,476532-476634,477089-477210,
           477303-477497,477627-477701,478082-478179,478328-478421
          Length = 303

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +2

Query: 56  TMNPWRLFINLFXMKLKNSCYARSLKPTPPKRKHRQN 166
           TM  W++FI  F +   + C+ + +K +     H +N
Sbjct: 250 TMKHWQVFILFFELFTASVCFGKRIKHSSISEGHDEN 286


>01_06_0357 -
           28668894-28669238,28669510-28669537,28669578-28669635,
           28669836-28669916,28670395-28670526,28670609-28670926,
           28672495-28673317
          Length = 594

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 93  LNKFINRRQGFIVPAGHSAGDG 28
           L+K    R GFIVP GH   +G
Sbjct: 244 LHKKNGIRNGFIVPIGHGGSEG 265


>01_01_1106 + 8750597-8754031
          Length = 1144

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +1

Query: 172 LIIILYSHNQ*NVSINCSTLHLPNNKTV 255
           L I++ SH+  ++++  ST HLPN +T+
Sbjct: 639 LQILILSHHASSLALPVSTSHLPNLQTL 666


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,362,874
Number of Sequences: 37544
Number of extensions: 125740
Number of successful extensions: 291
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)