Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_L14
(351 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ288392-1|ABC41342.1| 120|Apis mellifera nanos protein. 25 0.34
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 23 1.4
AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein ... 22 1.8
DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor pr... 21 5.6
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 21 5.6
EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase p... 20 7.4
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 20 7.4
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 20 7.4
AY703685-1|AAU12681.1| 200|Apis mellifera abdominal-A protein. 20 7.4
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 20 7.4
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 20 9.8
>DQ288392-1|ABC41342.1| 120|Apis mellifera nanos protein.
Length = 120
Score = 24.6 bits (51), Expect = 0.34
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 44 CPAGTMNPWRL-FINLFXMKLKNSCYARSLK 133
CP GT NP L +N F + L+NS R +K
Sbjct: 91 CPKGTKNPGTLATVNAFKL-LRNSMGKRRVK 120
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.6 bits (46), Expect = 1.4
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 129 LSRHHRNGNTDKMPFNHYIIFS*SMKCIHKL 221
L+ HHRN +T +M ++F + CI ++
Sbjct: 316 LNYHHRNADTHEMSEWVKVVFLYWLPCILRM 346
>AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein 1
protein.
Length = 500
Score = 22.2 bits (45), Expect = 1.8
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 105 KTPAMPEALSRHHRNGNTDKMPF 173
KT A+P L+RH+R +T + P+
Sbjct: 99 KTFAVPARLTRHYRT-HTGEKPY 120
>DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor
protein.
Length = 459
Score = 20.6 bits (41), Expect = 5.6
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -2
Query: 260 FQTVLLLGKCSVEQFMDTFH*L*EYNIMIKR 168
+ +VL + S+E+++ +H L Y +KR
Sbjct: 119 YVSVLTIVAFSIERYLAIYHPLRHYRSGLKR 149
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 20.6 bits (41), Expect = 5.6
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +2
Query: 134 PTPPKRKHRQN 166
P PP R H QN
Sbjct: 1860 PPPPPRNHDQN 1870
>EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase
protein.
Length = 620
Score = 20.2 bits (40), Expect = 7.4
Identities = 6/16 (37%), Positives = 12/16 (75%)
Frame = +2
Query: 188 ILIINEMYP*IVLRYI 235
+ +INE+YP +V + +
Sbjct: 157 VALINELYPGVVYKCV 172
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 20.2 bits (40), Expect = 7.4
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +2
Query: 218 IVLRYIYLIIKQFEN 262
I L YI+LI QF++
Sbjct: 177 IPLDYIFLIFNQFQD 191
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 20.2 bits (40), Expect = 7.4
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +2
Query: 218 IVLRYIYLIIKQFEN 262
I L YI+LI QF++
Sbjct: 177 IPLDYIFLIFNQFQD 191
>AY703685-1|AAU12681.1| 200|Apis mellifera abdominal-A protein.
Length = 200
Score = 20.2 bits (40), Expect = 7.4
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +1
Query: 25 AAIAGTVSCRNDESLA 72
AA AG SCR SLA
Sbjct: 140 AATAGDKSCRYTASLA 155
Score = 19.8 bits (39), Expect = 9.8
Identities = 7/16 (43%), Positives = 9/16 (56%)
Frame = +3
Query: 111 PAMPEALSRHHRNGNT 158
P + L HH+NG T
Sbjct: 165 PMVNYTLGHHHQNGAT 180
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 20.2 bits (40), Expect = 7.4
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +2
Query: 218 IVLRYIYLIIKQFEN 262
I L YI+LI QF++
Sbjct: 177 IPLDYIFLIFNQFQD 191
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 19.8 bits (39), Expect = 9.8
Identities = 5/9 (55%), Positives = 9/9 (100%)
Frame = -2
Query: 188 YNIMIKRHF 162
YNI+++RH+
Sbjct: 235 YNILLRRHY 243
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,988
Number of Sequences: 438
Number of extensions: 1405
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used: 8060325
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
- SilkBase 1999-2023 -