Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_L14
         (351 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02475.1 68414.m00198 expressed protein                             31   0.29 
At5g38400.1 68418.m04642 hypothetical protein                          27   4.6  
At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5 ...    26   6.1  
At3g30810.1 68416.m03942 hypothetical protein                          26   6.1  
At1g04550.2 68414.m00448 auxin-responsive protein / indoleacetic...    26   6.1  

>At1g02475.1 68414.m00198 expressed protein
          Length = 219

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 59  MNPWRLFINLFXMKLKNSCYARSLKPTPPKRKH 157
           ++ W L  N F   +K S  AR+L+PTP ++ H
Sbjct: 121 LSRWSLKYNAFGQDIKYSWLARNLQPTPNQKIH 153


>At5g38400.1 68418.m04642 hypothetical protein
          Length = 151

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 98  KLKNSCYARSLKPTPPKRK 154
           K + + Y  S+KP PPKRK
Sbjct: 42  KARMNVYKESMKPLPPKRK 60


>At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5
           family protein contains Pfam domain PF04153: NOT2 / NOT3
           / NOT5 family
          Length = 843

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 43  VSCRNDESLASIYKLIQXEAEKLLLCQK 126
           VS   ++SL    KLI+ E E+  +C+K
Sbjct: 76  VSASYEQSLVDARKLIEKEMERFKICEK 103


>At3g30810.1 68416.m03942 hypothetical protein 
          Length = 791

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 93  LNKFINRRQGFIVPAGHSAGDGSPFSTPAG 4
           L++F + +  F  P G + G G+ F+TPAG
Sbjct: 650 LDEFESNKDAF--PGGLAEGSGTVFATPAG 677


>At1g04550.2 68414.m00448 auxin-responsive protein / indoleacetic
           acid-induced protein 12 (IAA12) identical to SP|Q38830
           Auxin-responsive protein IAA12 (Indoleacetic
           acid-induced protein 12) {Arabidopsis thaliana}
          Length = 239

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 65  PWRLFIN-LFXMKLKNSCYARSLKPTPPKRKHRQ 163
           PWR+FIN +  +++  +  A  L P   ++K RQ
Sbjct: 201 PWRMFINSVKRLRIMGTSEASGLAPRRQEQKDRQ 234


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,839,787
Number of Sequences: 28952
Number of extensions: 99713
Number of successful extensions: 216
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 439384704
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)