Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_L13
(819 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0549 + 4082672-4082731,4083424-4083489,4083628-4083674,408... 32 0.48
04_04_0729 + 27612106-27612195,27612284-27612370,27612469-276125... 30 2.5
05_07_0067 + 27463703-27463705,27464309-27464365,27464779-274648... 29 3.4
04_04_0910 - 29321128-29321276,29321977-29322508,29323301-293237... 29 3.4
03_05_0339 + 23287620-23287676,23287784-23287849,23287937-232880... 29 3.4
10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234 29 4.4
06_03_0570 - 22363197-22363588,22363755-22366782 29 5.9
11_06_0066 - 19741883-19742263,19743001-19743231,19743378-197435... 28 7.8
>07_01_0549 +
4082672-4082731,4083424-4083489,4083628-4083674,
4083757-4083802,4083905-4083985,4084105-4084147,
4084258-4084307,4084392-4084473,4084538-4084587,
4084687-4084760,4084870-4084921,4085034-4085459,
4085816-4086403
Length = 554
Score = 32.3 bits (70), Expect = 0.48
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = +1
Query: 61 VCVVLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIK 240
VC+V+ + E +KK ++ SE + LV L D+ N L + C I
Sbjct: 46 VCIVIGYCEGGDMSEAIKKANSNYFSEERLCMWLVQLLMALDYLHVNHILHRDVKCSNI- 104
Query: 241 SQLMTKDGKFK-KDVALAKVPNAED 312
+TKD + D LAKV ++D
Sbjct: 105 --FLTKDQNIRLGDFGLAKVLTSDD 127
>04_04_0729 +
27612106-27612195,27612284-27612370,27612469-27612528,
27612554-27612688,27612769-27612864,27613149-27613214,
27613647-27613864,27614093-27614189,27614605-27614691,
27614892-27615026,27615121-27615225,27615717-27615845,
27615925-27616028,27616598-27616688,27616774-27616857
Length = 527
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = -1
Query: 60 DEHDKSLHDALCLGSRT 10
DE D+SLHDALC+ RT
Sbjct: 371 DEIDRSLHDALCIVKRT 387
>05_07_0067 +
27463703-27463705,27464309-27464365,27464779-27464844,
27464985-27465096,27465281-27465409,27466076-27466191,
27466364-27466440,27466678-27467163,27467255-27467570,
27467618-27467797
Length = 513
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = -1
Query: 96 LICEGLSQDNADDEHDKSLHDALCLGSRTRN 4
++ G S+ + DE ++SLHDALC+ S+T N
Sbjct: 343 IVLRGASE-HVLDEAERSLHDALCVLSQTVN 372
>04_04_0910 -
29321128-29321276,29321977-29322508,29323301-29323706,
29323933-29324028,29324563-29324645,29326620-29326732,
29327156-29327315
Length = 512
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/53 (24%), Positives = 30/53 (56%)
Frame = +1
Query: 7 SXSGSQTECIMKTFIVFVVCVVLAQALTDEQKENLKKHRADCLSETKADEQLV 165
S SGS++ CI +++++ + Q T ++E+L KH+ ++ D +++
Sbjct: 108 SLSGSESSCISRSYLLREIFATQTQ-FTKVEREDLGKHKDGRVTRVLGDMEII 159
>03_05_0339 +
23287620-23287676,23287784-23287849,23287937-23288048,
23288240-23288368,23288795-23288866,23289245-23289360,
23289494-23289570,23289788-23290273,23290373-23290688,
23290769-23290915
Length = 525
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = -1
Query: 96 LICEGLSQDNADDEHDKSLHDALCLGSRTRN 4
++ G S+ + DE ++SLHDALC+ S+T N
Sbjct: 366 IVLRGASE-HVLDEAERSLHDALCVLSQTVN 395
>10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234
Length = 856
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
Frame = +3
Query: 39 EDFYR--VRRLRCLGSGPHR*AEGELEETQSR-LSLRDE 146
EDF+R ++RL+ LG P GE+EE ++R +S+RD+
Sbjct: 103 EDFFRKSIQRLKTLG--PRHNIAGEIEELKARVISVRDQ 139
>06_03_0570 - 22363197-22363588,22363755-22366782
Length = 1139
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -1
Query: 123 SVFLQVLLLLICEGLSQDNADDEHDKSLHDALCLGSRTRN 4
+V L L + LS DDE +K L LCL SR N
Sbjct: 15 AVLYAFLTLPLIPSLSSTALDDESNKDLQALLCLKSRLSN 54
>11_06_0066 -
19741883-19742263,19743001-19743231,19743378-19743530,
19743667-19743726,19743806-19743874,19744639-19744719,
19744818-19744920,19745392-19745534,19745621-19745683,
19745803-19745870,19745974-19746055,19746147-19746260,
19746362-19746570,19746647-19746818
Length = 642
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -2
Query: 674 IKRDKQSYDEHRRKLNFGSRSNMLQQLNKIYRTDI 570
+KR KQ +E R+KL GS S +L+Q+ R D+
Sbjct: 353 LKRQKQEIEELRKKLQ-GSHSEVLEQVILKQRNDM 386
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,529,299
Number of Sequences: 37544
Number of extensions: 384425
Number of successful extensions: 898
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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