Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_L10
(603 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 40 3e-04
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 37 0.002
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 37 0.003
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 33 0.024
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 33 0.032
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos... 33 0.032
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch... 33 0.032
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 31 0.098
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 31 0.098
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 31 0.098
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 31 0.17
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 30 0.23
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 29 0.40
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 29 0.69
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 28 0.91
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 28 1.2
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 27 1.6
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 27 2.1
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 27 2.1
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 27 2.8
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 26 3.7
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 3.7
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 26 3.7
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 25 6.4
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 25 6.4
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 25 8.5
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 25 8.5
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 8.5
SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch... 25 8.5
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 8.5
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 39.9 bits (89), Expect = 3e-04
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Frame = +3
Query: 30 VRELFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 188
+ + F FG ++ C + + YGFVH D+ N AI+ +NGM+++ + + V
Sbjct: 184 LHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHH 243
Query: 189 TSRVRQR 209
SR R+R
Sbjct: 244 VSR-RER 249
Score = 32.7 bits (71), Expect = 0.042
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Frame = +3
Query: 3 LTDNXRAPEVRELFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELNGMMVD 161
L D ++ F FGT+ I+ + +GFV + N A+ E+N M+
Sbjct: 371 LQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLA 430
Query: 162 GQPMKVQLSTSRVRQR 209
G+P+ V L+ + +R
Sbjct: 431 GKPLYVALAQRKEVRR 446
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Frame = +3
Query: 36 ELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 188
ELF G V + R+ Y +V+ D A+ ELN ++ G+P ++ S
Sbjct: 98 ELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWS 156
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 37.1 bits (82), Expect = 0.002
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 234 CYRCGRGGHWSKECPKALGPDRNG 305
CYRCG+ GHW + CP P+ +G
Sbjct: 185 CYRCGQKGHWIQACPTNADPNYDG 208
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 36.7 bits (81), Expect = 0.003
Identities = 13/61 (21%), Positives = 32/61 (52%)
Frame = +3
Query: 27 EVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQ 206
++ + F+ +G +++C ++ +GFV ++ D D + + G G + V+ + R+
Sbjct: 19 DMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQGKEFMGSRIVVEPARGERRR 78
Query: 207 R 209
R
Sbjct: 79 R 79
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 33.5 bits (73), Expect = 0.024
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +3
Query: 48 KFGTVVECDIVRNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 197
K T + ++ R YGFV D A+ E+ G + +P++V L+T +
Sbjct: 217 KIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPK 266
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 33.1 bits (72), Expect = 0.032
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Frame = +3
Query: 39 LFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTS 194
+F +FG ++ C ++R+ Y F+ D V A ++ +++D + V S S
Sbjct: 263 IFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSRIHVDFSQS 322
Query: 195 RVRQR 209
R R
Sbjct: 323 VARYR 327
>SPBC8D2.01 |gsk31||serine/threonine protein kinase
Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 381
Score = 33.1 bits (72), Expect = 0.032
Identities = 17/62 (27%), Positives = 34/62 (54%)
Frame = -2
Query: 194 TRRQLHLHGLSVDHHTVQLFDSVVHIARRVQMHEAVVTHDIALDDRPELLKQLADFGRAR 15
TRR+ + LS+ + QLF ++ ++ H + ++ +D + +LK L DFG A+
Sbjct: 116 TRRRKSIPNLSIKLYAFQLFRALAYLHSTGVCHRDIKPQNLLVDYKTGILK-LCDFGSAK 174
Query: 14 IV 9
++
Sbjct: 175 VL 176
>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 33.1 bits (72), Expect = 0.032
Identities = 17/57 (29%), Positives = 33/57 (57%)
Frame = -2
Query: 185 QLHLHGLSVDHHTVQLFDSVVHIARRVQMHEAVVTHDIALDDRPELLKQLADFGRAR 15
QLH ++ H + Q+F+++ ++ R +H + +I L++ +L + ADFG AR
Sbjct: 368 QLHFTPGNIKHLSKQIFEALAYLHHRGVLHRDIKGSNILLNNNGDL--KFADFGLAR 422
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 31.5 bits (68), Expect = 0.098
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = +3
Query: 198 VRQRPGMGDPEQ---CYRCGRGGHWSKEC 275
VR P +P Q CY+CGR GH +++C
Sbjct: 70 VRDCPSSPNPRQGAECYKCGRVGHIARDC 98
Score = 30.7 bits (66), Expect = 0.17
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +3
Query: 222 DPEQ---CYRCGRGGHWSKECPKALGPDRNGFRDRAFGR 329
+P+Q CY CG GH ++CP + P R G GR
Sbjct: 53 EPQQEKTCYACGTAGHLVRDCPSSPNP-RQGAECYKCGR 90
Score = 30.3 bits (65), Expect = 0.23
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 231 QCYRCGRGGHWSKECPK 281
+CY CG GH ++EC K
Sbjct: 18 RCYNCGENGHQARECTK 34
Score = 27.9 bits (59), Expect = 1.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 231 QCYRCGRGGHWSKECPKA 284
+CY CG+ GH S EC +A
Sbjct: 136 KCYSCGKIGHRSFECQQA 153
Score = 25.0 bits (52), Expect = 8.5
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = +3
Query: 234 CYRCGRGGHWSKEC 275
CY CG GH +++C
Sbjct: 118 CYACGSYGHQARDC 131
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 31.5 bits (68), Expect = 0.098
Identities = 13/56 (23%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Frame = +3
Query: 30 VRELFQKFGTVVECDIVRN-----YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQ 182
V++ FQ++G ++ ++++ Y FV T D + A+ E ++DG+ ++++
Sbjct: 99 VKDYFQQWGPLLHVKVLKDWLQRPYSFVQFQNTDDASKALSEAQNTILDGRHIRIE 154
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 31.5 bits (68), Expect = 0.098
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Frame = +3
Query: 27 EVRELFQKFGTVVEC--------DIVRNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQ 182
++ ELF KFG + C +I + YGFV + AI LNG++ + + V
Sbjct: 436 QLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFVN 495
Query: 183 LSTSR 197
+ R
Sbjct: 496 YAEKR 500
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 30.7 bits (66), Expect = 0.17
Identities = 10/41 (24%), Positives = 23/41 (56%)
Frame = +3
Query: 81 RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVR 203
R YGFV + + A+ + G + G+P+++ +++ + R
Sbjct: 224 RKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSR 264
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 30.3 bits (65), Expect = 0.23
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +3
Query: 36 ELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 188
++F+ +G + + + NYGFV D A+ G V GQ + +++S
Sbjct: 382 KVFKIYGPLAQIVLKANYGFVQFFTNEDCARALNAEQGNFVRGQKLHLEIS 432
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 29.5 bits (63), Expect = 0.40
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 81 RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVR 203
R YGFV D A KEL + G+ +++ +T R R
Sbjct: 46 RGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDFATPRKR 86
Score = 29.1 bits (62), Expect = 0.52
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Frame = +3
Query: 42 FQKFGTVVECDI-------VRNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 197
F KFG V E I + + FV + +A+ LNG +DG+P+ V + S+
Sbjct: 128 FSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVSK 186
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 28.7 bits (61), Expect = 0.69
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Frame = +3
Query: 3 LTDNXRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKELNGMMV 158
L+ + + ++ F ++G + +VRN Y FV + D+ A K G+M+
Sbjct: 107 LSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKASAGLML 166
Query: 159 DGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGG-HWSKECPK 281
+G+ + V + R R G + G GG H++KE P+
Sbjct: 167 NGRRIVVDVE----RGRTVKGWLPRKLGGGLGGRHYTKERPR 204
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 28.3 bits (60), Expect = 0.91
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 81 RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVR 203
R +GFV + A +E NG + +P+K+ +TS V+
Sbjct: 70 RGFGFVSFKDSDQFLKAWREKNGKYIGSRPVKLSRATSDVK 110
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 27.9 bits (59), Expect = 1.2
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Frame = +3
Query: 3 LTDNXRAPEVRELFQKFGTVVECDI----VR--------NYGFVHLDATGDVNDAIKELN 146
L+ + + E+R LF+ GTV + I VR FV + DV+ AI+ LN
Sbjct: 51 LSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDKAIETLN 110
Query: 147 GMMVDGQPMKVQLSTSRVRQRP 212
G +D + + VQ V+++P
Sbjct: 111 GKTLDDREIVVQ-KARPVQEQP 131
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 81 RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 197
R +GFV D + AI+E+NG V + V+ + R
Sbjct: 258 RGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFR 296
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -2
Query: 209 PLPDTTRRQLHLHG-LSVDHHTVQLFD 132
PLPD T R+LHL+ L H++ L D
Sbjct: 633 PLPDETTRRLHLNNLLKYQKHSLSLED 659
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 27.1 bits (57), Expect = 2.1
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3
Query: 234 CYRCGRGGHWSKECPKAL 287
C+ C GH SK+CP L
Sbjct: 89 CHNCKGNGHISKDCPHVL 106
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Frame = +3
Query: 36 ELFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 179
+LF G+V+ I + +G V + D +I++LNG G+P+++
Sbjct: 298 DLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLNGYRYGGRPLQL 352
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +3
Query: 3 LTDNXRAPEVRELFQKFGTVVECDIVRNY--GFVHL 104
+T + R P +R +F++FG+V + NY GF+ +
Sbjct: 413 ITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLKM 448
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +3
Query: 87 YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 188
+GFV A+ +NG ++DG ++++LS
Sbjct: 667 FGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLS 700
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.2 bits (55), Expect = 3.7
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -1
Query: 288 PAPSGTPWTSGPRGHSGSTARGRPCPAAAGHDSSTTAPSWA 166
P P+ TP P+ SG+ + P PA + S APS A
Sbjct: 1044 PIPTSTPPV--PKSSSGAPSAPPPVPAPSSEIPSIPAPSGA 1082
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 193 LVDNCTFMGCPSTIIPFNSLIASFTSPVASKCT 95
+VD+ T S++IP +S + + +S VAS T
Sbjct: 113 VVDSATSAAASSSVIPTSSSVVASSSEVASSTT 145
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 25.4 bits (53), Expect = 6.4
Identities = 27/114 (23%), Positives = 55/114 (48%), Gaps = 15/114 (13%)
Frame = +3
Query: 30 VRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKE---LNGMMVDGQ--- 167
+R+ F++FG V++C ++R+ +GF+ VN+ + + L+G ++D +
Sbjct: 179 LRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPKRAI 238
Query: 168 PMKVQLSTSRVRQRPGMGD-PEQCYRCGRGGHWSKECPKALGPDRNGFRDRAFG 326
P + Q T+++ GD E+ +R + + L D++ R R FG
Sbjct: 239 PREEQEKTAKMFVGGVPGDCTEEEFR-NFFNQFGRVLDATLMMDKDTGRPRGFG 291
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +3
Query: 3 LTDNXRAPEVRELFQKFGTV 62
L+D+ R E+R+LF++FG +
Sbjct: 209 LSDDTREEELRDLFRRFGGI 228
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = -3
Query: 289 PSAFGHSLDQWPPRPQR*HCSGSPMPG 209
PS H+ +W H S SP+PG
Sbjct: 452 PSISSHNSAEWASGETTGHSSNSPLPG 478
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +3
Query: 78 VRNYGFVHLDATGDVNDAIK--ELNGMMVDGQPMKVQLSTSR 197
++ +G+V D++ A K E+NG + G+P ++ ST R
Sbjct: 406 LKGFGYVTFS---DIDSAKKCVEMNGHFIAGRPCRLDFSTPR 444
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.0 bits (52), Expect = 8.5
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = +3
Query: 234 CYRCGRGGHWSKEC 275
CY+CG+ H +EC
Sbjct: 1806 CYKCGKADHNLREC 1819
>SPAC18G6.07c |mra1||ribosome biogenesis protein
Mra1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 359
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 255 PRGHSGSTARGRPCPAAAGHDSST 184
P G S T + RP PA + H +T
Sbjct: 107 PNGASSKTVKARPLPAGSVHRVTT 130
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 25.0 bits (52), Expect = 8.5
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = +3
Query: 234 CYRCGRGGHWSKEC 275
CY+CG+ H +EC
Sbjct: 1806 CYKCGKADHNLREC 1819
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,966,441
Number of Sequences: 5004
Number of extensions: 35306
Number of successful extensions: 163
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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