Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_L10
(603 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 57 8e-09
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 57 1e-08
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 52 3e-07
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 52 3e-07
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 49 2e-06
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 48 4e-06
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 46 3e-05
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 42 2e-04
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 42 2e-04
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 42 2e-04
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 42 3e-04
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 42 3e-04
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 42 3e-04
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 42 3e-04
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 42 4e-04
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 41 5e-04
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 41 5e-04
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 41 7e-04
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 41 7e-04
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 41 7e-04
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 40 0.001
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 40 0.002
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 40 0.002
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 40 0.002
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 40 0.002
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 40 0.002
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 40 0.002
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 40 0.002
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 39 0.002
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 39 0.002
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 39 0.002
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein... 39 0.003
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 39 0.003
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 39 0.003
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 38 0.004
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 38 0.004
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 38 0.005
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 38 0.005
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 37 0.009
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 37 0.009
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 37 0.009
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 37 0.012
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 36 0.016
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 36 0.016
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 36 0.016
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 36 0.027
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 36 0.027
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 35 0.036
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 35 0.036
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 35 0.036
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 35 0.048
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 35 0.048
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 35 0.048
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 35 0.048
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 35 0.048
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 35 0.048
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 34 0.063
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 34 0.063
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 34 0.063
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 34 0.063
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 34 0.083
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 34 0.083
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 34 0.083
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 34 0.083
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 33 0.11
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 33 0.11
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 33 0.11
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 33 0.11
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 33 0.11
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 33 0.15
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 33 0.15
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 33 0.15
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 33 0.15
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 33 0.19
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 32 0.25
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 32 0.25
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 32 0.25
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 32 0.25
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 32 0.25
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 32 0.34
At3g62330.1 68416.m07002 zinc knuckle (CCHC-type) family protein... 32 0.34
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 32 0.34
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 32 0.34
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ... 32 0.34
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 31 0.44
At4g19130.1 68417.m02823 replication protein-related similar to ... 31 0.59
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 31 0.59
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 31 0.59
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 31 0.59
At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein... 31 0.78
At5g13920.1 68418.m01628 zinc knuckle (CCHC-type) family protein... 31 0.78
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 31 0.78
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 31 0.78
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 30 1.0
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 30 1.0
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 30 1.0
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 30 1.0
At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein... 30 1.0
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 30 1.0
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 30 1.0
At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein... 30 1.0
At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PS... 30 1.4
At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PS... 30 1.4
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 30 1.4
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 30 1.4
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 30 1.4
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 29 1.8
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 29 1.8
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 29 1.8
At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PS... 29 1.8
At3g15920.1 68416.m02013 phox (PX) domain-containing protein wea... 29 1.8
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 29 1.8
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 29 1.8
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 29 2.4
At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein... 29 2.4
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 29 2.4
At5g51300.2 68418.m06360 splicing factor-related contains simila... 29 3.1
At5g51300.1 68418.m06359 splicing factor-related contains simila... 29 3.1
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 29 3.1
At2g01930.2 68415.m00128 expressed protein 29 3.1
At2g01930.1 68415.m00127 expressed protein 29 3.1
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 29 3.1
At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein... 28 4.1
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 28 4.1
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 28 4.1
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 28 4.1
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 28 4.1
At1g14685.3 68414.m01750 expressed protein 28 4.1
At1g14685.2 68414.m01749 expressed protein 28 4.1
At1g14685.1 68414.m01748 expressed protein 28 4.1
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s... 28 5.5
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 28 5.5
At5g04540.1 68418.m00454 expressed protein 28 5.5
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 28 5.5
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 28 5.5
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 28 5.5
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 28 5.5
At1g68120.1 68414.m07781 expressed protein 28 5.5
At5g32613.1 68418.m03881 zinc knuckle (CCHC-type) family protein... 27 7.2
At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1) ide... 27 7.2
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 27 9.6
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 27 9.6
At3g10550.1 68416.m01266 expressed protein 27 9.6
At2g47310.1 68415.m05906 flowering time control protein-related ... 27 9.6
At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein... 27 9.6
At1g66260.1 68414.m07522 RNA and export factor-binding protein, ... 27 9.6
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 57.2 bits (132), Expect = 8e-09
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Frame = +3
Query: 3 LTDNXRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQ 182
L+ R ++ LF ++G V + D+ R+Y FV D +DA L+G DG + V+
Sbjct: 18 LSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYYLDGRDFDGSRITVE 77
Query: 183 LSTSR---VRQRPGMGDPE---QCYRCGRGGHWSKEC 275
S R G P +C+ CG GHW+++C
Sbjct: 78 ASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDC 114
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 56.8 bits (131), Expect = 1e-08
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Frame = +3
Query: 3 LTDNXRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQ 182
L+ R ++ LF ++G V + D+ R+Y FV D +DA L+G DG + V+
Sbjct: 18 LSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGRDFDGSRITVE 77
Query: 183 LSTSR---VRQRPGMGDPE---QCYRCGRGGHWSKEC 275
S R G P +C+ CG GHW+++C
Sbjct: 78 FSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDC 114
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 52.0 bits (119), Expect = 3e-07
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 21/116 (18%)
Frame = +3
Query: 27 EVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQ 182
++ F ++G + EC I+ R +GF+ +DAIK ++G + + + V
Sbjct: 27 QLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVN 86
Query: 183 LSTSRVRQRP-------------GMGDPEQCYRCGRGGHWSKECPKALGPDRNGFR 311
+ +V G G ++C++C R GHW+++CP + G DR FR
Sbjct: 87 KAEPKVGGEDVDQLKKGGGYSSRGKGTEDECFKCRRPGHWARDCP-STGDDRERFR 141
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 52.0 bits (119), Expect = 3e-07
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 21/116 (18%)
Frame = +3
Query: 27 EVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQ 182
++ F ++G + EC I+ R +GF+ +DAIK ++G + + + V
Sbjct: 27 QLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVN 86
Query: 183 LSTSRVRQRP-------------GMGDPEQCYRCGRGGHWSKECPKALGPDRNGFR 311
+ +V G G ++C++C R GHW+++CP + G DR FR
Sbjct: 87 KAEPKVGGEDVDQLKKGGGYSSRGKGTEDECFKCRRPGHWARDCP-STGDDRERFR 141
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Frame = +3
Query: 3 LTDNXRAPEVRELFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELNGMMVD 161
L D ++RELF +FGT+ C ++R+ GFV A + + + E+NG MV
Sbjct: 335 LDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVG 394
Query: 162 GQPMKVQLSTSRVRQR 209
G+P+ V L+ + +R
Sbjct: 395 GKPLYVALAQRKEERR 410
Score = 34.3 bits (75), Expect = 0.063
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Frame = +3
Query: 30 VRELFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 179
+ E F GT+V C + R YGFV D +AI++LNG +++ + + V
Sbjct: 150 LHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFV 206
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 48.4 bits (110), Expect = 4e-06
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 29/121 (23%)
Frame = +3
Query: 30 VRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQL 185
+R+ F+K+G +VE +V R +GF+ D +++AI +NGM +DG+ + V
Sbjct: 23 LRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDK 82
Query: 186 ST--------------------SRVRQRPGMG-DPEQCYRCGRGGHWSKECPKALGPDRN 302
+ R R RP G C++CG+ GH+++ECP D
Sbjct: 83 AQPHQGGAGRDNDGDRGRDRGYDRDRSRPSGGRGGGDCFKCGKPGHFARECPSESSRDGG 142
Query: 303 G 305
G
Sbjct: 143 G 143
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 45.6 bits (103), Expect = 3e-05
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Frame = +3
Query: 3 LTDNXRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMV 158
L+++ R P++ ELF+ FG V C + R +GFV + D AI +LNG
Sbjct: 181 LSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNGYGY 240
Query: 159 DGQPMKVQLSTSRVRQRP 212
D ++V+ ST + + P
Sbjct: 241 DNLILRVEWSTPKTQLDP 258
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 42.3 bits (95), Expect = 2e-04
Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Frame = +3
Query: 3 LTDNXRAPEVRELFQKFGTVVECDIV-----RNYGFVHLDATGDVNDAIKELNGMMVDGQ 167
L + R EV +LF K+G VV+ D+ Y FV + D +DAI +G DG
Sbjct: 14 LPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGYDFDGH 73
Query: 168 PMKVQLS-TSRVRQRPGMGDPEQCYRCGRGG 257
++V+L+ R G R GRGG
Sbjct: 74 HLRVELAHGGRRSSHDARGSYSGRGRGGRGG 104
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 42.3 bits (95), Expect = 2e-04
Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Frame = +3
Query: 3 LTDNXRAPEVRELFQKFGTVVECDIV-----RNYGFVHLDATGDVNDAIKELNGMMVDGQ 167
L + R EV +LF K+G VV+ D+ Y FV + D +DAI +G DG
Sbjct: 14 LPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGYDFDGH 73
Query: 168 PMKVQLS-TSRVRQRPGMGDPEQCYRCGRGG 257
++V+L+ R G R GRGG
Sbjct: 74 HLRVELAHGGRRSSHDARGSYSGRGRGGRGG 104
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 42.3 bits (95), Expect = 2e-04
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Frame = +3
Query: 81 RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVR---QRPGMGDPE---QCYR 242
R+Y FV D +DA L+G DG + V+ S R G P +C+
Sbjct: 3 RDYAFVEFSDPRDADDARYYLDGRDFDGSRITVEASRGAPRGSRDNGSRGPPPGSGRCFN 62
Query: 243 CGRGGHWSKEC 275
CG GHW+++C
Sbjct: 63 CGVDGHWARDC 73
Score = 29.1 bits (62), Expect = 2.4
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +3
Query: 231 QCYRCGRGGHWSKECPKALGPDR 299
+CYRCG GH + C + P +
Sbjct: 81 KCYRCGERGHIERNCKNSPSPKK 103
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 41.9 bits (94), Expect = 3e-04
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Frame = +3
Query: 81 RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQR---PGMGDPE---QCYR 242
R+Y FV D +DA L+G DG + V+ S R G P +C+
Sbjct: 3 RDYAFVEFGDPRDADDARHYLDGRDFDGSRITVEFSRGAPRGSRDFDSRGPPPGAGRCFN 62
Query: 243 CGRGGHWSKEC 275
CG GHW+++C
Sbjct: 63 CGVDGHWARDC 73
Score = 27.1 bits (57), Expect = 9.6
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3
Query: 231 QCYRCGRGGHWSKEC 275
+CYRCG GH + C
Sbjct: 81 KCYRCGERGHIERNC 95
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 41.9 bits (94), Expect = 3e-04
Identities = 33/105 (31%), Positives = 46/105 (43%), Gaps = 6/105 (5%)
Frame = +3
Query: 3 LTDNXRAPEVRELFQKFGTVVECDIV-----RNYGFVHLDATGDVNDAIKELNGMMVDGQ 167
L + R EV +LF K+G VV+ D+ Y FV D D DAI +G DG
Sbjct: 14 LPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGH 73
Query: 168 PMKVQLSTSRVRQRPGMGDPEQCYR-CGRGGHWSKECPKALGPDR 299
++V+L+ R D + GRGG + + GP R
Sbjct: 74 RLRVELAHG---GRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSR 115
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 41.9 bits (94), Expect = 3e-04
Identities = 33/105 (31%), Positives = 46/105 (43%), Gaps = 6/105 (5%)
Frame = +3
Query: 3 LTDNXRAPEVRELFQKFGTVVECDIV-----RNYGFVHLDATGDVNDAIKELNGMMVDGQ 167
L + R EV +LF K+G VV+ D+ Y FV D D DAI +G DG
Sbjct: 14 LPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGH 73
Query: 168 PMKVQLSTSRVRQRPGMGDPEQCYR-CGRGGHWSKECPKALGPDR 299
++V+L+ R D + GRGG + + GP R
Sbjct: 74 RLRVELAHG---GRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSR 115
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 41.9 bits (94), Expect = 3e-04
Identities = 33/105 (31%), Positives = 46/105 (43%), Gaps = 6/105 (5%)
Frame = +3
Query: 3 LTDNXRAPEVRELFQKFGTVVECDIV-----RNYGFVHLDATGDVNDAIKELNGMMVDGQ 167
L + R EV +LF K+G VV+ D+ Y FV D D DAI +G DG
Sbjct: 14 LPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGH 73
Query: 168 PMKVQLSTSRVRQRPGMGDPEQCYR-CGRGGHWSKECPKALGPDR 299
++V+L+ R D + GRGG + + GP R
Sbjct: 74 RLRVELAHG---GRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSR 115
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 41.5 bits (93), Expect = 4e-04
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 14/103 (13%)
Frame = +3
Query: 27 EVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQ 182
++ LF FG V ++ R FV + D A + ++ +++G+ + V
Sbjct: 72 DIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSMDAKILNGRKLTVS 131
Query: 183 LSTSRVR-----QRPGMGDPEQCYRCGRGGHWSKECPK-ALGP 293
++ R ++ D +CY CG GH S ECPK LGP
Sbjct: 132 IAADNGRASEFIKKRVYKDKSRCYECGDEGHLSYECPKNQLGP 174
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 41.1 bits (92), Expect = 5e-04
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Frame = +3
Query: 30 VRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQL 185
+R+LF FG + E ++R+ +GF+ D+ D A+K L+G +VDG+ + V++
Sbjct: 23 LRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSLDGKIVDGRLIFVEV 82
Query: 186 STSRVRQRPGM 218
+ + R G+
Sbjct: 83 AKNAEEVRAGI 93
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 41.1 bits (92), Expect = 5e-04
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 15/98 (15%)
Frame = +3
Query: 27 EVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQ 182
++ +F +FGTVV D++R+ Y F+ + A +++ ++D + + V
Sbjct: 258 DLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKMDNALIDDRRIHVD 317
Query: 183 LST------SRVRQRPGM-GDPEQCYRCGRGGHWSKEC 275
S S+ RQ+ G C++CG H +K+C
Sbjct: 318 FSQSVSKLWSQFRQKDSQKGKGNGCFKCGSTDHIAKDC 355
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 40.7 bits (91), Expect = 7e-04
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Frame = +3
Query: 30 VRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQL 185
+++ F FG V E ++ R +GFV N+AIKE++G ++G+ ++V L
Sbjct: 51 LKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNL 110
Query: 186 STSR 197
+T R
Sbjct: 111 ATER 114
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 40.7 bits (91), Expect = 7e-04
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Frame = +3
Query: 30 VRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQL 185
+++ F FG V E ++ R +GFV N+AIKE++G ++G+ ++V L
Sbjct: 51 LKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNL 110
Query: 186 STSR 197
+T R
Sbjct: 111 ATER 114
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 40.7 bits (91), Expect = 7e-04
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Frame = +3
Query: 3 LTDNXRAPEVRELFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELNGMMVD 161
L D+ ++ ELF +FGT+ C ++ + GFV + + + A+ ++NG MV
Sbjct: 230 LDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVG 289
Query: 162 GQPMKVQLSTSRVRQR 209
+P+ V L+ + + +
Sbjct: 290 NKPIYVSLAQCKEQHK 305
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Frame = +3
Query: 3 LTDNXRAPEVRELFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELNGMMVD 161
L + +++ LF +FG + ++ R +GFV+ + AI+++NG++VD
Sbjct: 126 LVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVD 185
Query: 162 GQPMKV 179
+ + V
Sbjct: 186 EKELHV 191
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Frame = +3
Query: 228 EQCYRCGRGGHWSKECPKA---LGPDRNGFRDRAFGRDXXXXXXXXXFLRDRMMXXXXXX 398
++C++CGR GHW+++CP A G GF RA RDR +
Sbjct: 126 DECFKCGRVGHWARDCPSAGGGRGGPVGGFSSRASAYGGSDGRVDRYADRDRYVDRERYI 185
Query: 399 XXXXXXRSRFDSPRDLFERR 458
+R+ + RD F+ R
Sbjct: 186 DDRYDGAARYGA-RDRFDSR 204
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 39.5 bits (88), Expect = 0.002
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 10/90 (11%)
Frame = +3
Query: 27 EVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQ 182
+++ F +FG V++ I+ R +GFV + DAI+E+NG +DG+ + V
Sbjct: 21 DLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVN 80
Query: 183 LSTSRVR--QRPGMGDPEQCYRCGRGGHWS 266
+ SR G G YR G GG +S
Sbjct: 81 EAQSRGSGGGGGGRGGSGGGYRSGGGGGYS 110
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 39.5 bits (88), Expect = 0.002
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 10/90 (11%)
Frame = +3
Query: 27 EVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQ 182
+++ F +FG V++ I+ R +GFV + DAI+E+NG +DG+ + V
Sbjct: 21 DLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVN 80
Query: 183 LSTSRVR--QRPGMGDPEQCYRCGRGGHWS 266
+ SR G G YR G GG +S
Sbjct: 81 EAQSRGSGGGGGGRGGSGGGYRSGGGGGYS 110
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Frame = +3
Query: 3 LTDNXRAPEVRELFQKFGTVV--------ECDIVRNYGFVHLDATGDVNDAIKELNGMMV 158
L+++ R P++ ELF FG V + + R +GFV+ + D AI +LNG
Sbjct: 220 LSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNGYGY 279
Query: 159 DGQPMKVQLSTSR 197
D ++V+ +T R
Sbjct: 280 DNLILRVEWATPR 292
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = +3
Query: 30 VRELFQKFGTVVECDIVR----NYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 179
++E+F G + C ++R +YGFVH + AI LNG + GQPMKV
Sbjct: 79 LQEIFASTGPIESCKLIRKDKSSYGFVHYFDRRCASMAIMTLNGRHIFGQPMKV 132
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = +3
Query: 30 VRELFQKFGTVVECDIVR----NYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 179
++E+F G + C ++R +YGFVH + AI LNG + GQPMKV
Sbjct: 79 LQEIFASTGPIESCKLIRKDKSSYGFVHYFDRRCASMAIMTLNGRHIFGQPMKV 132
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 39.5 bits (88), Expect = 0.002
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Frame = +3
Query: 27 EVRELFQKFGTVVECDIVRN---YGFVHLDATGDVNDAIKEL---NGMMVDGQPMKVQLS 188
E+ + F+ FG + + R Y F+ D D DAI L NG V+
Sbjct: 17 ELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDRKNGWRVELSHKDKGGR 76
Query: 189 TSRVRQRPGMGDPEQCYRCGRGGHWSKECPKALGPDR 299
+R G+ D +CY CG GH+++EC + G R
Sbjct: 77 GGGGGRRGGIED-SKCYECGELGHFARECRRGRGSVR 112
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 39.5 bits (88), Expect = 0.002
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Frame = +3
Query: 27 EVRELFQKFGTVVECDIVRN---YGFVHLDATGDVNDAIKEL---NGMMVDGQPMKVQLS 188
E+ + F+ FG + + R Y F+ D D DAI L NG V+
Sbjct: 17 ELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDRKNGWRVELSHKDKGGR 76
Query: 189 TSRVRQRPGMGDPEQCYRCGRGGHWSKECPKALGPDR 299
+R G+ D +CY CG GH+++EC + G R
Sbjct: 77 GGGGGRRGGIED-SKCYECGELGHFARECRRGRGSVR 112
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 39.1 bits (87), Expect = 0.002
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 10/111 (9%)
Frame = +3
Query: 3 LTDNXRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMV 158
L+ N + ++ +LF+ G V +++ R +GFV + +V A ++ NG
Sbjct: 106 LSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEF 165
Query: 159 DGQPMKVQLSTSRVRQRPGM--GDPEQCYRCGRGGHWSKECPKALGPDRNG 305
+G+P++V ++ G Y RGG + E G +R G
Sbjct: 166 EGRPLRVNAGPPPPKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGG 216
Score = 35.1 bits (77), Expect = 0.036
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Frame = +3
Query: 30 VRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQL 185
+ LF + G VVE ++ + +GFV L ++ +V AI LNG +DG+ ++V
Sbjct: 265 LENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSE 324
Query: 186 STSR 197
+ +R
Sbjct: 325 AEAR 328
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 39.1 bits (87), Expect = 0.002
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 10/111 (9%)
Frame = +3
Query: 3 LTDNXRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMV 158
L+ N + ++ +LF+ G V +++ R +GFV + +V A ++ NG
Sbjct: 106 LSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEF 165
Query: 159 DGQPMKVQLSTSRVRQRPGM--GDPEQCYRCGRGGHWSKECPKALGPDRNG 305
+G+P++V ++ G Y RGG + E G +R G
Sbjct: 166 EGRPLRVNAGPPPPKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGG 216
Score = 35.1 bits (77), Expect = 0.036
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Frame = +3
Query: 30 VRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQL 185
+ LF + G VVE ++ + +GFV L ++ +V AI LNG +DG+ ++V
Sbjct: 273 LENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSE 332
Query: 186 STSR 197
+ +R
Sbjct: 333 AEAR 336
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 39.1 bits (87), Expect = 0.002
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 162 GQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGHWSKEC 275
GQ Q + + + GD CY+CG+ GHWS++C
Sbjct: 321 GQSSNQQFQSGQAKSTSSTGD---CYKCGKAGHWSRDC 355
Score = 37.1 bits (82), Expect = 0.009
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 177 VQLSTSRVRQRPGMGDPEQCYRCGRGGHWSKECPKALG 290
VQ T V+ GD C++CG+ GHWS++C G
Sbjct: 254 VQSDTGPVKSTSAAGD---CFKCGKPGHWSRDCTAQSG 288
Score = 35.1 bits (77), Expect = 0.036
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = +3
Query: 231 QCYRCGRGGHWSKEC 275
+CY+CG+ GHWS++C
Sbjct: 305 ECYKCGKQGHWSRDC 319
Score = 34.7 bits (76), Expect = 0.048
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 186 STSRVRQRPGMGDPEQCYRCGRGGHWSKEC 275
S +R Q G P CY+CG+ GHW+++C
Sbjct: 225 SDTRGYQNAKTGTP--CYKCGKEGHWARDC 252
>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 282
Score = 38.7 bits (86), Expect = 0.003
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 225 PEQCYRCGRGGHWSKECPKA 284
P C++CGR GHWS++CP +
Sbjct: 5 PTGCFKCGRPGHWSRDCPSS 24
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Frame = +3
Query: 3 LTDNXRAPEVRELFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELNGMMVD 161
L D+ +++E+F ++G V C ++ N +GFV + A+KE+NG M+
Sbjct: 335 LDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIG 394
Query: 162 GQPMKVQLS 188
+P+ V L+
Sbjct: 395 RKPLYVALA 403
Score = 34.3 bits (75), Expect = 0.063
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Frame = +3
Query: 36 ELFQKFGTVVEC----DIV---RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 179
E F FGT++ C D+V + YGFV + AI +LNGM+++ + + V
Sbjct: 150 ETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFV 204
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 38.7 bits (86), Expect = 0.003
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Frame = +3
Query: 3 LTDNXRAPEVRELFQKFGTVVECDIV-----RNYGFVHLDATGDVNDAIKELNGMMVDGQ 167
L + R EV +LF K+G +V+ D+ Y FV + D +DAI +G DG
Sbjct: 14 LPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGYDFDGC 73
Query: 168 PMKVQLSTSRVRQRPGMGDPEQCYRCGR 251
++V+++ R P + Y R
Sbjct: 74 RLRVEIAHGGRRFSPSVDRYSSSYSASR 101
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 38.3 bits (85), Expect = 0.004
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Frame = +3
Query: 3 LTDNXRAPEVRELFQKFGTVVECDIVRN-----YGFVHLDATGDVNDAIKELNGMMVDGQ 167
L + R E+ ++F K+G +V+ ++ Y FV + + D DAIK +G +DG
Sbjct: 14 LPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGRDGYNLDGC 73
Query: 168 PMKVQLS-----TSRVRQRPGMGDPEQCYRCGRGG 257
++V+L+ S +R G G Y G GG
Sbjct: 74 RLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGG 108
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 38.3 bits (85), Expect = 0.004
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Frame = +3
Query: 24 PEVRELFQKFGTVVECDIVR----NYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 179
P ++E+F G V C ++R +YGFVH AI LNG + GQP+KV
Sbjct: 68 PLLQEVFAGTGPVESCKLIRKEKSSYGFVHYFDRRSAGLAILSLNGRHLFGQPIKV 123
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 37.9 bits (84), Expect = 0.005
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Frame = +3
Query: 30 VRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQL 185
+ LF + G VV+ +V R +GFV + +VN AI L+G ++G+ +KV +
Sbjct: 223 LERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNV 282
Query: 186 STSRVRQ 206
+ R R+
Sbjct: 283 AEERTRR 289
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 37.9 bits (84), Expect = 0.005
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 8/75 (10%)
Frame = +3
Query: 9 DNXRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDG 164
DN R + +LF + G VVE +V R +GFV + ++N+AI L+G ++G
Sbjct: 256 DNGR---LEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEG 312
Query: 165 QPMKVQLSTSRVRQR 209
+ ++V ++ R +R
Sbjct: 313 RAIRVNVAEERPPRR 327
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 37.1 bits (82), Expect = 0.009
Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 8/68 (11%)
Frame = +3
Query: 30 VRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQL 185
+ LF + G VVE ++ + +GFV D++ +V +AIK L+G +DG+ ++V
Sbjct: 220 LESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSE 279
Query: 186 STSRVRQR 209
+ +R +R
Sbjct: 280 AEARPPRR 287
Score = 35.9 bits (79), Expect = 0.021
Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Frame = +3
Query: 12 NXRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQ 167
N + ++ +LF+ G V +++ R +GFV + + +V A ++ NG +DG+
Sbjct: 101 NVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGR 160
Query: 168 PMKVQLSTSRVRQRPG 215
P++V ++ G
Sbjct: 161 PLRVNAGPPPPKREDG 176
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 37.1 bits (82), Expect = 0.009
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Frame = +3
Query: 3 LTDNXRAPEVRELFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELNGMMVD 161
L ++ ++RE F FGT+ C ++R+ GFV + AI E+NG M+
Sbjct: 334 LDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIV 393
Query: 162 GQPMKVQLS 188
+P+ V L+
Sbjct: 394 TKPLYVALA 402
Score = 33.9 bits (74), Expect = 0.083
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Frame = +3
Query: 30 VRELFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 188
+ E F FG ++ C + + YGFV D AI +LNGM+++ + + V
Sbjct: 149 LHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPF 208
Query: 189 TSRVRQRP 212
++++ P
Sbjct: 209 VHKLQRDP 216
Score = 31.5 bits (68), Expect = 0.44
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Frame = +3
Query: 3 LTDNXRAPEVRELFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELNGMMVD 161
L+++ E+ ++F +FG C I+R+ +GFV+ + + D A+ LNG D
Sbjct: 231 LSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFD 290
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Frame = +3
Query: 36 ELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 188
E F + G VV + R+ YG+V+ D + A+ ELN M ++G+ ++V S
Sbjct: 63 EAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELNFMALNGRAIRVMYS 121
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 37.1 bits (82), Expect = 0.009
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = +3
Query: 30 VRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVR 203
++ +F ++G +V I + GFV +A++ LNG+ + G V+LS R
Sbjct: 277 LKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNGVQLGG--TTVRLSWGRSP 334
Query: 204 QRPGMGDPEQCYRCGRG 254
GDP Q Y G G
Sbjct: 335 SNKQSGDPSQFYYGGYG 351
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 36.7 bits (81), Expect = 0.012
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Frame = +3
Query: 3 LTDNXRAPEVRELFQKFGTVVECDIV------RNYGFVHLDATGDVNDAIKELNGMMVDG 164
+ +N +++ELFQ+ G V + R++GFVH A+K+ V+G
Sbjct: 299 IPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNG 358
Query: 165 QPMKVQLSTSRVRQR 209
QP++V L+ + ++
Sbjct: 359 QPLEVVLAKPQAERK 373
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 36.3 bits (80), Expect = 0.016
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Frame = +3
Query: 30 VRELFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 188
VR +F +G+V+ IV + YGFV +DAI++++G + G+ ++V
Sbjct: 23 VRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDMDGKSIGGRAVRVNDV 82
Query: 189 TSR-VRQRPGMG 221
T+R R PG G
Sbjct: 83 TTRGGRMNPGPG 94
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 36.3 bits (80), Expect = 0.016
Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 15/113 (13%)
Frame = +3
Query: 27 EVRELFQKFGTVVECDIVRN---YGFVHLDATGDVNDAIKEL---NGMMVDGQPMKVQLS 188
E+ + F+ FG V + R Y F+ + D DAI+ L NG V+ + +
Sbjct: 17 ELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDGKNGWRVEQSHNRGERG 76
Query: 189 TS-RVRQRPGMGDPE--------QCYRCGRGGHWSKECPKALGPDRNGFRDRA 320
R R G G +CY CG GH+++EC G R + R+
Sbjct: 77 GGGRGGDRGGGGGGRGGRGGSDLKCYECGETGHFARECRNRGGTGRRRSKSRS 129
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 36.3 bits (80), Expect = 0.016
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 13/96 (13%)
Frame = +3
Query: 27 EVRELFQKFGTVVECDIVRN---YGFVHLDATGDVNDAIKEL---NGMMVDGQPMKVQLS 188
E+ + F+ FG + + R Y F+ + + D DAI+E+ NG V+ Q
Sbjct: 17 ELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDGKNGWRVE-QSHNRGGG 75
Query: 189 TSRVRQRPGM-------GDPEQCYRCGRGGHWSKEC 275
R R G G +CY CG GH+++EC
Sbjct: 76 GGRGGGRGGGDGGRGRGGSDLKCYECGESGHFAREC 111
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 35.5 bits (78), Expect = 0.027
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Frame = +3
Query: 27 EVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQ 182
+++ F +FG V++ I+ R +GFV + DAI+E+NG +DG+ + V
Sbjct: 21 DLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVN 80
Query: 183 LSTSR 197
+ SR
Sbjct: 81 EAQSR 85
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 35.5 bits (78), Expect = 0.027
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = +3
Query: 18 RAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 197
R ++ LF K+G V D+ Y FV+ + D DAI++L+ + ++ + ++
Sbjct: 14 RQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPFGYEKRRLSVEWAK 73
Query: 198 VRQRPGMGD 224
+ GD
Sbjct: 74 GERGRPRGD 82
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 35.1 bits (77), Expect = 0.036
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +3
Query: 81 RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGM 218
R +GF + + D N +++LNG V+G+ +KV ++ + P +
Sbjct: 117 RRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDL 162
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Frame = +3
Query: 30 VRELFQKFGTVVECDIVR--------NYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 179
+ LF + G VV + R +GFV + DV AI LN +++GQ ++V
Sbjct: 193 LENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRV 250
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 35.1 bits (77), Expect = 0.036
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 222 DPEQCYRCGRGGHWSKECPKA 284
+ +CYRCG GH+++ECP +
Sbjct: 323 EASECYRCGEEGHFARECPNS 343
Score = 32.3 bits (70), Expect = 0.25
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 186 STSRVRQRPGMGDPEQCYRCGRGGHWSKECPKA 284
++S + G CYRC GH+++ECP +
Sbjct: 342 NSSSISTSHGRESQTLCYRCNGSGHFARECPNS 374
Score = 27.1 bits (57), Expect = 9.6
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +3
Query: 234 CYRCGRGGHWSKECP 278
CY CG GH S CP
Sbjct: 168 CYSCGEQGHTSFNCP 182
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 35.1 bits (77), Expect = 0.036
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Frame = +3
Query: 117 DVNDAIKELNGMMVDGQPMKVQLSTSRVRQR---PGMGDPE---QCYRCGRGGHWSKEC 275
D +DA L+G DG + V+ S R G P +C+ CG GHW+++C
Sbjct: 26 DADDARHYLDGRDFDGSRITVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDC 84
Score = 27.1 bits (57), Expect = 9.6
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3
Query: 231 QCYRCGRGGHWSKEC 275
+CYRCG GH + C
Sbjct: 92 KCYRCGERGHIERNC 106
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 34.7 bits (76), Expect = 0.048
Identities = 17/68 (25%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
Frame = +3
Query: 27 EVRELFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQL 185
+++E+F FGTV ++R+ GFV + +A+ +L+G M++ +P+ V +
Sbjct: 147 KLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAI 206
Query: 186 STSRVRQR 209
+ + +R
Sbjct: 207 AQRKEDRR 214
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 34.7 bits (76), Expect = 0.048
Identities = 18/75 (24%), Positives = 34/75 (45%)
Frame = +3
Query: 9 DNXRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 188
DN R ++ + F+ +G +V I RN+ F+ +A D A+ N + + + V+ +
Sbjct: 66 DNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYA 125
Query: 189 TSRVRQRPGMGDPEQ 233
R PE+
Sbjct: 126 VKDDDARGNGHSPER 140
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 34.7 bits (76), Expect = 0.048
Identities = 18/75 (24%), Positives = 34/75 (45%)
Frame = +3
Query: 9 DNXRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 188
DN R ++ + F+ +G +V I RN+ F+ +A D A+ N + + + V+ +
Sbjct: 107 DNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYA 166
Query: 189 TSRVRQRPGMGDPEQ 233
R PE+
Sbjct: 167 VKDDDARGNGHSPER 181
Score = 33.9 bits (74), Expect = 0.083
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +3
Query: 18 RAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELN 146
R ++ LF+K+G V D+ + FV+++ D DAI+ L+
Sbjct: 14 REGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALD 56
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 34.7 bits (76), Expect = 0.048
Identities = 13/49 (26%), Positives = 31/49 (63%)
Frame = +3
Query: 81 RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGMGDP 227
R +GF+ ++ +V A+ +NG+ V+G+ +++ L++ R++P + P
Sbjct: 260 RGFGFISFESAENVQSALATMNGVEVEGRALRLNLASE--REKPTVSPP 306
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 34.7 bits (76), Expect = 0.048
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Frame = +3
Query: 3 LTDNXRAPEVRELFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELNGMMVD 161
L+++ +RE+F +G +V ++ + +GFV + A + LNG +VD
Sbjct: 311 LSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVD 370
Query: 162 GQPMKVQLS 188
G+P+ V+++
Sbjct: 371 GKPIVVRVA 379
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 34.7 bits (76), Expect = 0.048
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = +3
Query: 24 PEVRELFQKFGTVVECDIVR----NYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 179
P ++E+F G V ++R +YGFVH AI LNG + GQP+KV
Sbjct: 73 PLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFDRRSAALAILSLNGRHLFGQPIKV 128
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 34.3 bits (75), Expect = 0.063
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +3
Query: 18 RAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELN 146
R ++ LF+K+G V D+ + FV+++ D DAI+ L+
Sbjct: 14 RESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALD 56
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 34.3 bits (75), Expect = 0.063
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +3
Query: 18 RAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIKELN 146
R ++ LF+K+G V D+ + FV+++ D DAI+ L+
Sbjct: 14 RESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALD 56
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 34.3 bits (75), Expect = 0.063
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Frame = +3
Query: 27 EVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQ 182
E+ FQ FG V+ + + +GF+ D+ +AI +NG + G+ +KVQ
Sbjct: 354 ELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTMNGCQLSGKKLKVQ 413
Query: 183 LSTSRVRQR 209
L +Q+
Sbjct: 414 LKRDNGQQQ 422
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 34.3 bits (75), Expect = 0.063
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Frame = +3
Query: 27 EVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQ 182
E+ FQ FG V+ + + +GF+ D+ +AI +NG + G+ +KVQ
Sbjct: 345 ELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTMNGCQLSGKKLKVQ 404
Query: 183 LSTSRVRQR 209
L +Q+
Sbjct: 405 LKRDNGQQQ 413
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 33.9 bits (74), Expect = 0.083
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 18 RAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVNDAIK 137
R ++ LF KFG V D+ Y FV+ + D DAI+
Sbjct: 14 RHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIR 53
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 33.9 bits (74), Expect = 0.083
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Frame = +3
Query: 42 FQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 197
F ++G V++ I+ R +GFV + DAI+ +NG +DG+ + V + SR
Sbjct: 28 FAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR 87
Query: 198 VRQRPG--MGDPEQCYRCGRGGHWS 266
G G YR G GG +S
Sbjct: 88 GSGGGGGHRGGGGGGYRSGGGGGYS 112
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 33.9 bits (74), Expect = 0.083
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +3
Query: 201 RQRPGMGDPEQCYRCGRGGHWSKECPKALGPDRNGFR 311
R R G+ C+ CG GH + ECP A DR GFR
Sbjct: 220 RDREGVSAMIICHNCGGRGHRAYECPSARVADR-GFR 255
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 33.9 bits (74), Expect = 0.083
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Frame = +3
Query: 36 ELFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 179
E F FGT++ C + + YGFV + AI +LNGM+++ + + V
Sbjct: 154 ETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFV 208
Score = 33.5 bits (73), Expect = 0.11
Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Frame = +3
Query: 3 LTDNXRAPEVRELFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELNGMMVD 161
L D+ +++E+F ++G V ++ R +GFV + A+ E+NG M+
Sbjct: 339 LDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIG 398
Query: 162 GQPMKVQLSTSRVRQR 209
+P+ + L+ + +R
Sbjct: 399 RKPLYIALAQRKEDRR 414
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 7/49 (14%)
Frame = +3
Query: 27 EVRELFQKFGTVVECDIVRN-------YGFVHLDATGDVNDAIKELNGM 152
E+R+ F KFG + ++R+ +GFV+ + T A++++NG+
Sbjct: 244 ELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGI 292
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 33.5 bits (73), Expect = 0.11
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 213 GMGDPEQCYRCGRGGHWSKEC 275
G G+ CY+CG+ GH+++EC
Sbjct: 275 GGGNDNACYKCGKEGHFAREC 295
Score = 31.9 bits (69), Expect = 0.34
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 228 EQCYRCGRGGHWSKECPKALGPDRNG 305
E CY CG GH++++C A D+ G
Sbjct: 132 EGCYNCGDTGHFARDCTSAGNGDQRG 157
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 207 RPGMGDPEQCYRCGRGGHWSKECPKALGPDRNGFR 311
R G G CY CG GH +++C P R ++
Sbjct: 223 RSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQ 257
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +3
Query: 135 KELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGHWSKEC 275
K +N G +K + ++ R G G CY CG GH SK+C
Sbjct: 70 KAVNVTAPGGGSLKKENNSRGNGARRG-GGGSGCYNCGELGHISKDC 115
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +3
Query: 219 GDPEQCYRCGRGGHWSKECPK--ALGPDRNG 305
G + CY CG GH++++C + A G R+G
Sbjct: 195 GGNDGCYTCGDVGHFARDCTQKVAAGNVRSG 225
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 33.5 bits (73), Expect = 0.11
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Frame = +3
Query: 27 EVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRV 200
++R+ F +FG VV I + GFV DAI+ LNG ++ V+LS R
Sbjct: 336 DLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNGTVIGKN--TVRLSWGRS 393
Query: 201 RQRPGMGDPEQCYRCGRG-GH 260
+ GD Q + G GH
Sbjct: 394 PNKQWRGDSGQQWNGGYSRGH 414
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +3
Query: 81 RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 197
+ YGFV + + A+ E+NG + M+V ++T +
Sbjct: 244 KGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPK 282
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 33.5 bits (73), Expect = 0.11
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Frame = +3
Query: 30 VRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQL 185
+++ F FG V E I R +GFV GD A ++G + G+P+++
Sbjct: 57 LKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAMDGKGLLGRPLRISF 116
Query: 186 STSRVRQRP 212
+ RVR P
Sbjct: 117 ALERVRGGP 125
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 33.5 bits (73), Expect = 0.11
Identities = 30/127 (23%), Positives = 47/127 (37%), Gaps = 1/127 (0%)
Frame = +3
Query: 81 RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGH 260
R +GF+ + + GD N I+ L+ ++ G+ + V+ + R + P G R RG H
Sbjct: 116 RGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEKARRRRGRTPTPG-KYLGLRTARGRH 174
Query: 261 WSKECPKALGPDRNGFRDRAFGRDXXXXXXXXXFLRDRMMXXXXXXXXXXXXR-SRFDSP 437
S + R R++ D R R SR SP
Sbjct: 175 KSPSYSPRRSVSCSRSRSRSYSSDRGRSYSPSYGRRGRSSSYSPFYRRRRFYSPSRSPSP 234
Query: 438 RDLFERR 458
D + RR
Sbjct: 235 DDRYNRR 241
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 33.5 bits (73), Expect = 0.11
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Frame = +3
Query: 27 EVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQ 182
++ ++FQ FGTV+ ++ RN G+V + + AI L+G V G+ M+V+
Sbjct: 123 QLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVR 182
Query: 183 LS 188
S
Sbjct: 183 YS 184
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 33.1 bits (72), Expect = 0.15
Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Frame = +3
Query: 6 TDNXRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKELNGMMVD 161
+D+ ++++F +FG V I+ N YG+V ++ D A++ +NG D
Sbjct: 85 SDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGKFFD 144
Query: 162 GQPMKVQLSTSRVRQR 209
G+ + V+ + +R
Sbjct: 145 GRFILVKFGQPGLSRR 160
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 33.1 bits (72), Expect = 0.15
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +3
Query: 81 RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVR 203
+ YGFV D+ A+KE+NG V +P+K++ S+ + R
Sbjct: 178 KGYGFVSFLNPADLAAALKEMNGKYVGNRPIKLRKSSWKER 218
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 33.1 bits (72), Expect = 0.15
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
Frame = +3
Query: 30 VRELFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELNGMMVDGQPM---KV 179
++++F+KFG +V C + R YGFV + + AI+ LN +V + + K
Sbjct: 128 LQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKF 187
Query: 180 QLSTSRVR 203
T RV+
Sbjct: 188 MKKTDRVK 195
Score = 31.5 bits (68), Expect = 0.44
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Frame = +3
Query: 27 EVRELFQKFGTVVECDIV-------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQL 185
E+R+ F + GT+ ++ + +GFV + DA+K +G M G+P+ V +
Sbjct: 319 ELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAI 378
Query: 186 STSR 197
+ +
Sbjct: 379 AQKK 382
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 33.1 bits (72), Expect = 0.15
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +3
Query: 30 VRELFQKFGTVV---ECDIVRNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 188
+R +FQ +G V E R FV D A++ +NG ++ G+PM +Q S
Sbjct: 199 LRHIFQVYGEVKQVRETPCKREQRFVEFFDVRDAAKALRVMNGKVISGKPMVIQFS 254
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 32.7 bits (71), Expect = 0.19
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +3
Query: 84 NYGFVHLDATGDVNDAIKELNGM--MVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGG 257
N G +++ T D + L G + DG +S+S+V++R CY CG G
Sbjct: 352 NAGSYNMEDTYAAADPVPALAGRSEVDDGNYFATTVSSSKVKRRV-------CYECGEKG 404
Query: 258 HWSKECP 278
H S CP
Sbjct: 405 HLSTACP 411
Score = 29.5 bits (63), Expect = 1.8
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +3
Query: 234 CYRCGRGGHWSKECPKAL 287
CY CG GH S CP L
Sbjct: 576 CYECGEKGHLSSACPNKL 593
Score = 27.9 bits (59), Expect = 5.5
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +3
Query: 234 CYRCGRGGHWSKECP 278
CY CG GH S CP
Sbjct: 481 CYECGEKGHLSTACP 495
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 32.3 bits (70), Expect = 0.25
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Frame = +3
Query: 36 ELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLST 191
E F K G VVE IV + +GFV + + A+ E NG ++G+ + V +
Sbjct: 52 EAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAK 111
Query: 192 SRVRQRPGMGDP 227
++ G G P
Sbjct: 112 AKQSLGGGGGYP 123
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 32.3 bits (70), Expect = 0.25
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Frame = +3
Query: 27 EVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQ 182
E+ FQ FG V+ + + +GFV D+ +AI +NG + G+ +KVQ
Sbjct: 364 ELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMMNGRHLGGKKLKVQ 423
Query: 183 LSTSRVRQRP 212
L +P
Sbjct: 424 LKRDSNNGQP 433
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 32.3 bits (70), Expect = 0.25
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +3
Query: 222 DPEQCYRCGRGGHWSKEC 275
DP CY+CG+ GH+++ C
Sbjct: 32 DPRACYKCGKLGHFARSC 49
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 32.3 bits (70), Expect = 0.25
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Frame = +3
Query: 3 LTDNXRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMV 158
L+ N ++E+F FG V+ +I R +G+V A D A ++G +
Sbjct: 105 LSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQI 164
Query: 159 DGQPMK 176
DG+ +K
Sbjct: 165 DGKVVK 170
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 32.3 bits (70), Expect = 0.25
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Frame = +3
Query: 3 LTDNXRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMV 158
L+ N ++E+F FG V+ +I R +G+V A D A ++G +
Sbjct: 105 LSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQI 164
Query: 159 DGQPMK 176
DG+ +K
Sbjct: 165 DGKVVK 170
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 31.9 bits (69), Expect = 0.34
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Frame = +3
Query: 30 VRELFQKFGTVV---ECDIVRNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQ 182
+R+LF F ++ + + +GF+ ++ D A+K LNG +V+G+ + V+
Sbjct: 87 LRQLFAPFARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLIFVE 140
>At3g62330.1 68416.m07002 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 479
Score = 31.9 bits (69), Expect = 0.34
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +3
Query: 234 CYRCGRGGHWSKECPKALGPDRNG--FRDRAFGRD 332
C CG GH+++ CP LG +R F +R RD
Sbjct: 94 CKICGESGHFTQGCPSTLGANRKSQEFFERVPARD 128
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 31.9 bits (69), Expect = 0.34
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 207 RPGMGDPEQCYRCGRGGHWSKECPKALG 290
R G G C++CG GH ++EC + G
Sbjct: 129 RGGGGGDNSCFKCGEPGHMARECSQGGG 156
Score = 29.1 bits (62), Expect = 2.4
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 213 GMGDPEQCYRCGRGGHWSKEC 275
G G CY CG GH++++C
Sbjct: 175 GGGGGLSCYSCGESGHFARDC 195
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 31.9 bits (69), Expect = 0.34
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 213 GMGDPEQCYRCGRGGHWSKECPKALGPDRNG 305
G G CY CG GH +K+C G +R G
Sbjct: 156 GGGGGRPCYSCGEVGHLAKDCRGGSGGNRYG 186
Score = 29.9 bits (64), Expect = 1.4
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 219 GDPEQCYRCGRGGHWSKECPKALGPDRNG 305
G +CY CG GH++++C ++ G + G
Sbjct: 127 GGEGECYMCGDVGHFARDCRQSGGGNSGG 155
Score = 29.9 bits (64), Expect = 1.4
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 213 GMGDPEQCYRCGRGGHWSKEC 275
G G +C+ CG+ GH+++EC
Sbjct: 277 GGGGSNKCFICGKEGHFAREC 297
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 180 QLSTSRVRQRPGMGDPEQCYRCGRGGHWSKECPK 281
++ TS++ G G CY CG GH +++C +
Sbjct: 237 KVCTSKIPSGGG-GGGRACYECGGTGHLARDCDR 269
Score = 27.9 bits (59), Expect = 5.5
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = +3
Query: 201 RQRPGMGDPEQCYRCGRGGHWSKECPKALG 290
++ G C+ CG GH +K+C G
Sbjct: 85 KENSSRGSGGNCFNCGEVGHMAKDCDGGSG 114
>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 947
Score = 31.9 bits (69), Expect = 0.34
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 219 GDPEQCYRCGRGGHWSKECPKALG 290
G E+C+ CG+ GH++ +CP G
Sbjct: 260 GQQEKCFVCGQTGHFASDCPGKSG 283
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 31.5 bits (68), Expect = 0.44
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 81 RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 197
+ YGFV + N A+ E+NG+ +PM++ +T +
Sbjct: 158 KGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPK 196
>At4g19130.1 68417.m02823 replication protein-related similar to
replication protein A 70kDa [Oryza sativa] GI:13536993;
contains Pfam profile PF00098: Zinc knuckle
Length = 461
Score = 31.1 bits (67), Expect = 0.59
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +3
Query: 213 GMGDPEQCYRCGRGGHWSKECPKALGPDRNG 305
G G C CG GH S +CP A P G
Sbjct: 405 GGGATTSCNVCGNSGHVSAKCPGATKPQEQG 435
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 31.1 bits (67), Expect = 0.59
Identities = 16/67 (23%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Frame = +3
Query: 27 EVRELFQKFGTVVECDI-----VRNYG--FVHLDATGDVNDAIKELNGMMVDGQPMKVQL 185
++R LF+K+G+V++ ++ RN G F+ + + + A+K L +G+ +KV
Sbjct: 109 DIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLESCEYEGRRLKVDY 168
Query: 186 STSRVRQ 206
+ ++ ++
Sbjct: 169 AKTKKKK 175
>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
protein
Length = 987
Score = 31.1 bits (67), Expect = 0.59
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +3
Query: 3 LTDNXRAPEVRELFQKFGTVVECDIVRNYGFVHLD-ATGDVNDAIKELNGMMVDGQPMKV 179
L+ + ++R+LF GTVV+C I + +++ + + A LN V G+ + V
Sbjct: 358 LSPSLTTEQLRQLFSFCGTVVDCSITDSKHIAYIEYSNSEEATAALALNNTEVFGRALNV 417
Query: 180 QLSTS 194
+++ S
Sbjct: 418 EIAKS 422
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 31.1 bits (67), Expect = 0.59
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3
Query: 81 RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKV 179
+NYGF+ + D + AIK LN + + G+P++V
Sbjct: 66 QNYGFIEYRSEEDADYAIKVLNMIKLHGKPIRV 98
>At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 341
Score = 30.7 bits (66), Expect = 0.78
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 234 CYRCGRGGHWSKEC 275
CYRCG HW+K C
Sbjct: 278 CYRCGMDDHWAKTC 291
>At5g13920.1 68418.m01628 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 415
Score = 30.7 bits (66), Expect = 0.78
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3
Query: 234 CYRCGRGGHWSKECP 278
C+RC + GHW +CP
Sbjct: 11 CFRCRQAGHWINDCP 25
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 30.7 bits (66), Expect = 0.78
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 207 RPGMGDPEQCYRCGRGGHWSKEC 275
R G G CY CG GH++++C
Sbjct: 176 RGGGGGGGSCYSCGESGHFARDC 198
Score = 28.3 bits (60), Expect = 4.1
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +3
Query: 234 CYRCGRGGHWSKECPKALG 290
CY+CG GH +++C + G
Sbjct: 131 CYKCGEPGHMARDCSEGGG 149
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 30.7 bits (66), Expect = 0.78
Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Frame = +3
Query: 27 EVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQ 182
E+++ F K+G VVE ++R+ +GFV D+ V++ + + G M+D +V+
Sbjct: 124 ELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK--GNMIDMADTQVE 181
Query: 183 LSTSRVRQRPGMGDPEQCYRCGRGGHWSKECPKALGPDRNGFRDRAFG 326
+ + ++ P Y G S + + G GF D +G
Sbjct: 182 IKKAEPKKSLNRSPPS--YGSHPRGRSSNDSYASYGGPYGGF-DGGYG 226
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 30.3 bits (65), Expect = 1.0
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +3
Query: 135 KELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGHWSKECPKALGPDRN 302
K+ G D +P + ST + PGM E C+ C H +K CP+ +RN
Sbjct: 44 KKKPGSSTD-RPQRTGSSTRHPLRVPGMKPGEGCFICHSKTHIAKLCPEKSEWERN 98
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 186 STSRVRQRPGMGDPEQCYRCGRGGHWSKECPKALG 290
S+SR R G C+ CG+ GH + +CP G
Sbjct: 714 SSSRAPSRESFGG--SCFICGKSGHRATDCPDKRG 746
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 30.3 bits (65), Expect = 1.0
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = +3
Query: 27 EVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRV 200
+++ +F +FG +V I + GFV A+ LNG + GQ +++ S
Sbjct: 293 DLKSVFGQFGELVHVKIPAGKRCGFVQYANRACAEQALSVLNGTQLGGQSIRLSWGRSPS 352
Query: 201 RQRPGMGDPEQCYRCGRGGHW 263
++ P+Q G GG++
Sbjct: 353 NKQT---QPDQAQYGGGGGYY 370
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +3
Query: 27 EVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 188
E+ + F +FG + R+Y FV+ + D AI+ L G + G P++++ +
Sbjct: 38 ELADRFLRFGELESLAFQPGRSYAFVNFNHDEDAFAAIESLQGFPLSGNPLRIEFA 93
>At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein
contains Pfam profile PF00098: Zinc knuckle
Length = 200
Score = 30.3 bits (65), Expect = 1.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 186 STSRVRQRPGMGDPEQCYRCGRGGHWSKECP 278
S SR R + G+ C+ CG GH+ +CP
Sbjct: 146 SVSRDRSK-SKGEKGACWICGEDGHYKNDCP 175
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 30.3 bits (65), Expect = 1.0
Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Frame = +3
Query: 30 VRELFQKFGTVVECDIV------RNYGFVHLDATGD--VNDAIKELNGMMVDGQPMKVQL 185
+R F+ FG +VE I+ R+ G+ L+ T + A+KE+NG +++G + V +
Sbjct: 298 LRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNGKIINGWMIVVDV 357
Query: 186 STSR 197
+ ++
Sbjct: 358 AKTK 361
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 30.3 bits (65), Expect = 1.0
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Frame = +3
Query: 42 FQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 197
F ++G V++ I+ R +GFV + DAI+ +NG +DG+ + V + SR
Sbjct: 28 FAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR 87
>At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein
contains INTERPRO domain, IPR001878: Zn-finger CCHC type
Length = 353
Score = 30.3 bits (65), Expect = 1.0
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3
Query: 234 CYRCGRGGHWSKECP 278
C+ C + GHW+K CP
Sbjct: 6 CFHCHQPGHWAKNCP 20
>At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 403
Score = 29.9 bits (64), Expect = 1.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 222 DPEQCYRCGRGGHWSKECPK 281
DP +C+ CG H +ECP+
Sbjct: 194 DPPRCFNCGAYSHSIRECPR 213
>At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 405
Score = 29.9 bits (64), Expect = 1.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 222 DPEQCYRCGRGGHWSKECPK 281
DP +C+ CG H +ECP+
Sbjct: 194 DPPRCFNCGAYSHSIRECPR 213
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 29.9 bits (64), Expect = 1.4
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = +3
Query: 81 RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 197
R YGFV + ++ A++ L+G ++G+ ++V L+ +
Sbjct: 218 RGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGK 256
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/64 (21%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +3
Query: 27 EVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRV 200
++++ F +FG +V I + GFV + +A+++LNG ++ Q +++ +
Sbjct: 321 DLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPA 380
Query: 201 RQRP 212
++P
Sbjct: 381 NKQP 384
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/64 (21%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +3
Query: 27 EVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRV 200
++++ F +FG +V I + GFV + +A+++LNG ++ Q +++ +
Sbjct: 319 DLKQPFNEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPA 378
Query: 201 RQRP 212
++P
Sbjct: 379 NKQP 382
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 29.5 bits (63), Expect = 1.8
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +3
Query: 114 GDVNDAIKELNGMMVDGQPMKVQL 185
GD A+K+ N + +DG+PMK+++
Sbjct: 137 GDALAAVKKYNDVQLDGKPMKIEI 160
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 29.5 bits (63), Expect = 1.8
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +3
Query: 114 GDVNDAIKELNGMMVDGQPMKVQL 185
GD A+K+ N + +DG+PMK+++
Sbjct: 73 GDALAAVKKYNDVQLDGKPMKIEI 96
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 29.5 bits (63), Expect = 1.8
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +3
Query: 114 GDVNDAIKELNGMMVDGQPMKVQL 185
GD A+K+ N + +DG+PMK+++
Sbjct: 139 GDALAAVKKYNDVQLDGKPMKIEI 162
>At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 532
Score = 29.5 bits (63), Expect = 1.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 222 DPEQCYRCGRGGHWSKECPK 281
DP +C+ CG H +ECP+
Sbjct: 239 DPPRCFNCGGYSHSLRECPR 258
>At3g15920.1 68416.m02013 phox (PX) domain-containing protein weak
similarity to myosin heavy chain [Rana catesbeiana]
GI:4249699; contains Pfam profile PF00787: PX domain
Length = 755
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/43 (37%), Positives = 17/43 (39%)
Frame = -1
Query: 297 GRGPAPSGTPWTSGPRGHSGSTARGRPCPAAAGHDSSTTAPSW 169
GR P P G W+S PR H P G T PSW
Sbjct: 73 GRSPLPLGMDWSSPPR-HLEGRDTVWPHDHRTGWSYCVTVPSW 114
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = +3
Query: 81 RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGH 260
+ YGFV + + A+ E+NG + M+V ++T + G + Q GGH
Sbjct: 255 KGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLA-GGH 313
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 29.5 bits (63), Expect = 1.8
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Frame = +3
Query: 30 VRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQL 185
++E F FG +V+ +V R +GFV D+ N+A++ + +DG+ + V
Sbjct: 52 LKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAMQNKELDGRIIGVHP 111
Query: 186 STSRVRQRPGMGDPEQCYRCGRGGH 260
+ S G Y GRGG+
Sbjct: 112 ADSGGGGGGGGFARRGGYGGGRGGY 136
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = +3
Query: 3 LTDNXRAPEVRELFQKFGTVVECDIV--RNYGFVHLDATGDVNDAIKELNGMMVDGQPMK 176
L N E++ +F +FG ++ I + GFV A+ LNG + GQ ++
Sbjct: 267 LDANVTDDELKSIFGQFGELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQLGGQSIR 326
Query: 177 VQLSTSRVRQ 206
+ S +Q
Sbjct: 327 LSWGRSPNKQ 336
>At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 516
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +3
Query: 210 PGMGDPEQCYRCGRGGHWSKECP 278
P M D +CY CG GH S CP
Sbjct: 357 PYMVDCAKCYSCGGVGHVSMYCP 379
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Frame = +3
Query: 18 RAPEVRELFQKFGTVVECDIVRNY--------GFVHLDATGDVNDAIKELNGMMVDGQPM 173
R ++R+ F++FG + + + RNY GFV D +A+K +N ++ G+ +
Sbjct: 59 RPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGREI 118
Query: 174 KV 179
+
Sbjct: 119 AI 120
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Frame = +3
Query: 39 LFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 188
LF FG +V ++++ YGFV N A++ +NG +G+ + V+++
Sbjct: 499 LFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIA 556
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Frame = +3
Query: 39 LFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 188
LF FG +V ++++ YGFV N A++ +NG +G+ + V+++
Sbjct: 499 LFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIA 556
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 87 YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 188
YGFV + +AI +LNG + G+P+ ++ S
Sbjct: 238 YGFVSFATREEAENAITKLNGKEIMGRPITLKFS 271
>At2g01930.2 68415.m00128 expressed protein
Length = 283
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +3
Query: 219 GDPEQCYRCGRGGHWSKEC 275
G P+QCYR G GG W C
Sbjct: 199 GTPQQCYRWGCGG-WQSAC 216
>At2g01930.1 68415.m00127 expressed protein
Length = 283
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +3
Query: 219 GDPEQCYRCGRGGHWSKEC 275
G P+QCYR G GG W C
Sbjct: 199 GTPQQCYRWGCGG-WQSAC 216
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +3
Query: 81 RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQ 182
R +GF+ + + GD N I+ L+ ++ G+ + V+
Sbjct: 86 RGFGFISMKSVGDANRCIRSLDHSVLQGRVITVE 119
>At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 275
Score = 28.3 bits (60), Expect = 4.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3
Query: 231 QCYRCGRGGHWSKEC 275
QC +C + GHW+ EC
Sbjct: 99 QCQKCFQAGHWTYEC 113
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 81 RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 188
R YGFV+ + N AI +NG ++G + V ++
Sbjct: 72 RGYGFVNFISEDSANSAISAMNGQELNGFNISVNVA 107
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Frame = +3
Query: 27 EVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQ 182
E+++ F K+G VVE ++R+ +GFV D+ V++ + + G M+D +V
Sbjct: 124 ELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK--GNMIDMADTQVS 181
Query: 183 L 185
L
Sbjct: 182 L 182
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Frame = +3
Query: 27 EVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQ 182
++++ F FG +V+ ++ + +GFV D A E+N +DG + V
Sbjct: 49 KLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVD 108
Query: 183 LSTSRVRQRPGMGDP 227
+ R +RP +P
Sbjct: 109 PARPREPRRPLQQEP 123
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 28.3 bits (60), Expect = 4.1
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Frame = +3
Query: 3 LTDNXRAPEVRELFQKFGTVVECDIVRNY--------GFVHLDATGDVNDAIKELNGMMV 158
L + R ++R+ F++FG V + + R+Y GFV D DA ++G ++
Sbjct: 43 LRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLL 102
Query: 159 DGQPMKVQLSTSRVRQRP 212
G+ + V + R++P
Sbjct: 103 LGRELTVVFAEEN-RKKP 119
>At1g14685.3 68414.m01750 expressed protein
Length = 279
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +3
Query: 219 GDPEQCYRCGRGGHWSKEC 275
G P+QCYR G GG W C
Sbjct: 195 GAPQQCYRWGCGG-WQSAC 212
>At1g14685.2 68414.m01749 expressed protein
Length = 279
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +3
Query: 219 GDPEQCYRCGRGGHWSKEC 275
G P+QCYR G GG W C
Sbjct: 195 GAPQQCYRWGCGG-WQSAC 212
>At1g14685.1 68414.m01748 expressed protein
Length = 279
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +3
Query: 219 GDPEQCYRCGRGGHWSKEC 275
G P+QCYR G GG W C
Sbjct: 195 GAPQQCYRWGCGG-WQSAC 212
>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
[Drosophila melanogaster]
Length = 926
Score = 27.9 bits (59), Expect = 5.5
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 4/72 (5%)
Frame = +3
Query: 99 HLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQ----CYRCGRGGHWS 266
HL G +D +K+L + G + + + G + C C + GH S
Sbjct: 718 HLGCVGGCDDILKQLIDICGTGSRSQARRTPGTAPSNNIQGSNTRQSNVCIHCQQRGHAS 777
Query: 267 KECPKALGPDRN 302
CP + RN
Sbjct: 778 TNCPSRVPASRN 789
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
Frame = +3
Query: 6 TDNXRAPEVRELFQKFGTVVECDIVRN--------YGFVHLDATGDVNDAIKELNG 149
+D+ ++++F +FG V I+ N YG+V ++ D A++ +NG
Sbjct: 66 SDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNG 121
>At5g04540.1 68418.m00454 expressed protein
Length = 833
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +1
Query: 433 LHGTCSSDAIQLEEHHEGWNW 495
+HGT SSD H GW W
Sbjct: 371 MHGTTSSDGTSSFLRHGGWTW 391
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 8/49 (16%)
Frame = +3
Query: 27 EVRELFQKFGTVVECDIV--------RNYGFVHLDATGDVNDAIKELNG 149
+++ F +FG V++ I+ R +GFV + DAI+E+NG
Sbjct: 21 DLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNG 69
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 27.9 bits (59), Expect = 5.5
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Frame = +3
Query: 18 RAPEVRELFQKFGTVVECDIVRNY--------GFVHLDATGDVNDAIKELNGMMVDGQPM 173
R E+RE F++FG V + I R+Y FV D +A + +N G+ +
Sbjct: 59 RPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREI 118
Query: 174 KVQLSTSRVRQRP 212
V ++ S R+RP
Sbjct: 119 TVVVA-SESRKRP 130
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 27.9 bits (59), Expect = 5.5
Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 10/119 (8%)
Frame = +3
Query: 3 LTDNXRAPEVRELFQKFGTVVECDIVRNY--------GFVHLDATGDVNDAIKELNGMMV 158
L + R ++R F++FG V + + R+Y GF+ D +A +++G ++
Sbjct: 44 LRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLL 103
Query: 159 DGQPMKVQLSTSRVRQRPGMGDPEQCYRCGRGGHWSKECPK--ALGPDRNGFRDRAFGR 329
G+ + V + ++ M ++ R R + P+ P R G R R+ R
Sbjct: 104 LGRELTVVFAEENRKKPTEMRTRDRGGRSNRFQDRRRSPPRYSRSPPPRRGRRSRSRSR 162
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 27.9 bits (59), Expect = 5.5
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +3
Query: 219 GDPEQCYRCGRGGHWSKEC 275
G E+C+ CG+ GH++ C
Sbjct: 259 GQQERCFLCGQMGHFASNC 277
>At1g68120.1 68414.m07781 expressed protein
Length = 270
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +3
Query: 219 GDPEQCYRCGRGGHWSKEC 275
G P+QCYR G GG W C
Sbjct: 186 GMPQQCYRWGCGG-WQSAC 203
>At5g32613.1 68418.m03881 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 457
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +3
Query: 225 PEQCYRCGRGGHWSKECPKAL 287
P +C CGR GH C K L
Sbjct: 312 PPKCLNCGRYGHLLSRCSKPL 332
>At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1)
identical to RNA-dependent RNA polymerase [Arabidopsis
thaliana] gi|8248473|gb|AAF74208
Length = 1196
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +3
Query: 78 VRNYGFVHL---DATGDVNDAIKELNGMMVDGQPMKVQL 185
V + FVH ++ G DA + N +++DGQP+KV L
Sbjct: 75 VEPHAFVHFAVFESAGRAMDAAGQCN-LILDGQPLKVSL 112
>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
putative transcriptional coactivator ALY, Mus musculus,
EMBL:MMU89876
Length = 288
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Frame = +3
Query: 27 EVRELFQKFGTVVECDIV-----RNYGFVHL--DATGDVNDAIKELNGMMVDGQPMKVQL 185
++RELF + G V I R G + D A+K+ N +++DG+PM++++
Sbjct: 108 DIRELFSEIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLDGRPMRLEI 167
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +3
Query: 81 RNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 197
+ Y F+ T D+ A K+ +G +DG+ + V + R
Sbjct: 179 KGYAFIEYMHTRDMKAAYKQADGQKIDGRRVLVDVERGR 217
>At3g10550.1 68416.m01266 expressed protein
Length = 634
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +1
Query: 433 LHGTCSSDAIQLEEHHEGWNW 495
+HGT SSD H GW W
Sbjct: 168 MHGTTSSDGRSSFLRHGGWTW 188
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 27.1 bits (57), Expect = 9.6
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Frame = +3
Query: 27 EVRELFQKFGTVVEC-------DIVRNYGFVHLDATGDVNDAIKELNGMMV---DGQPMK 176
EV E+F ++G + + I R Y FV AIK LNG+ QP+
Sbjct: 222 EVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKALNGLFTIRGSDQPLI 281
Query: 177 VQLSTSRVRQRPGMGDPEQCY 239
V+ + + +P +G+ +
Sbjct: 282 VRFADPK---KPRLGEQRSTF 299
>At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 474
Score = 27.1 bits (57), Expect = 9.6
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 234 CYRCGRGGHWSKECP 278
CYRC + GH +K CP
Sbjct: 227 CYRCKQEGHIAKICP 241
>At1g66260.1 68414.m07522 RNA and export factor-binding protein,
putative similar to GI:7159943 from [Mus musculus] (RNA
6 (4), 638-650 (2000))
Length = 295
Score = 27.1 bits (57), Expect = 9.6
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +3
Query: 117 DVNDAIKELNGMMVDGQPMKVQLSTSRVRQRP 212
D A+++ N +++DG+PMK+++ P
Sbjct: 159 DAIQAMRKYNNVLLDGRPMKLEILGGNTESAP 190
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,006,822
Number of Sequences: 28952
Number of extensions: 216602
Number of successful extensions: 1228
Number of sequences better than 10.0: 146
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1207
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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