Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_L09
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schi...    29   0.67 
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    28   1.2  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    26   4.7  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    26   4.7  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    26   6.2  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.2  

>SPAC17A5.09c |||protein phosphatase regulatory subunit
           Glc9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 310

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = +3

Query: 171 GMPSCSKRAKEQRFDEMNIMETFHPPNKDYGHMKVEEPKTPFSETVDGDLEPNDE 335
           G PS  +R +  R+DE N+ +      +    MK+ EPKTPF       L P+DE
Sbjct: 48  GTPS-EERIRRLRWDEENLSKA---EQQKSAKMKITEPKTPFQRF----LLPDDE 94


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +3

Query: 156 VDGSDGMPSCSKRAKEQRFDEMNIMETFHPPNKDYGHMKVEEPKTPFSETVDGDLEPND 332
           ++GSDG+P    +  E   D  + +       K YG +KV  P +  +   +  ++P+D
Sbjct: 28  IEGSDGIPVVEPKISEF-VDMESFIRRVERLGKKYGAIKVVRPSSVLNPWNEDTMKPSD 85


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 204 QRFDEMNIMETFHPPNKDYGHMKVEEPKT 290
           + FD+ N   +  PPN  Y H ++E P+T
Sbjct: 164 ESFDDDNYYNSLLPPNAPYYH-EIEPPRT 191


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
 Frame = +3

Query: 147 SRSVDGSDGMPSCSKRAKEQRFDEM------NIMETFHPPNKDYGHMKVEEPKTPFSETV 308
           S+  D  D +   ++R KE     +       I  T H   +   HM  E PKTP +E+ 
Sbjct: 266 SKFSDAIDEVQKYNERVKESTLTAIIEPTSNRINPTLHSGRQSSYHMP-ESPKTPIAESP 324

Query: 309 DGDLEPND 332
           D D   N+
Sbjct: 325 DHDNWDNE 332


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/58 (24%), Positives = 24/58 (41%)
 Frame = -1

Query: 238  KVSIMFISSNLCSFARLLQDGIPSEPSTLRDXFNMPLEGFFCKFCAIIFVYIGILHVI 65
            K  I    S LCS+   + DG   E     D +  PL+     F  +  +   ++H++
Sbjct: 1138 KTQISEFLSQLCSYFTKIVDGTVIENDKTLDFYEKPLQAVLYWFATLHKIRSFLVHLL 1195


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 441 PPAPPCPRHYRHRTPRTSAACS 376
           PPAPP PR    RT   S+  S
Sbjct: 224 PPAPPKPRRLAARTSSNSSGVS 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,769,219
Number of Sequences: 5004
Number of extensions: 53567
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)