Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_L09
         (721 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0327 - 2942640-2943456,2944386-2944515,2944679-2944811           31   0.92 
05_05_0091 + 22319411-22320901                                         29   2.8  
05_03_0388 + 13401985-13402117,13404122-13404173,13405867-134059...    29   2.8  
04_04_1148 + 31264847-31264870,31264987-31265062,31265226-31265887     29   2.8  
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862...    29   3.7  
02_05_1332 + 35758657-35758728,35758959-35760689                       28   6.5  
09_02_0327 - 7284829-7284889,7284946-7286126                           28   8.6  

>08_01_0327 - 2942640-2943456,2944386-2944515,2944679-2944811
          Length = 359

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
 Frame = -2

Query: 516 PVVMPGI--HCNAFSFSSRTRYAFGVLPPAPP---CPRHYRH 406
           P  +PG+  HC  F F + T  A G + P PP    P H  H
Sbjct: 184 PPAVPGLPHHCPLFMFDTTTTGAGGAISPPPPSSLIPTHLHH 225


>05_05_0091 + 22319411-22320901
          Length = 496

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 188 TARWHSVRAIDATRRLQYALGG 123
           TARWH+ R++D  RR +   GG
Sbjct: 427 TARWHAERSLDRQRRFEVGGGG 448


>05_03_0388 +
           13401985-13402117,13404122-13404173,13405867-13405982,
           13406080-13406247,13407047-13407255
          Length = 225

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 19/46 (41%), Positives = 25/46 (54%)
 Frame = +3

Query: 180 SCSKRAKEQRFDEMNIMETFHPPNKDYGHMKVEEPKTPFSETVDGD 317
           SCS+R K   ++E N+ E     NK     K+ EPKTP+   VD D
Sbjct: 61  SCSRRVK---WNEDNLYEI--ESNKPV-RQKITEPKTPYHPMVDDD 100


>04_04_1148 + 31264847-31264870,31264987-31265062,31265226-31265887
          Length = 253

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 20/50 (40%), Positives = 23/50 (46%)
 Frame = -2

Query: 555 HYLRHLLEPSAVEPVVMPGIHCNAFSFSSRTRYAFGVLPPAPPCPRHYRH 406
           HY R   EP+ V PV +P    NA  +     YA G  P  PP P   RH
Sbjct: 184 HYSRP--EPAMVVPVHLPYYAANATPY-----YAGGYYPIPPPMPAMLRH 226


>10_08_0608 +
           19184722-19185224,19185331-19185410,19186048-19186235,
           19187021-19187927,19188015-19188142,19189270-19189356,
           19189422-19189472,19189582-19189668,19189746-19189873,
           19190469-19190608,19190721-19190882,19190964-19192733,
           19192807-19192922,19193077-19193227,19193243-19193371,
           19193598-19194139
          Length = 1722

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +3

Query: 162 GSDGMPSCSKRAKEQRFDEMNIMETFHPPNKDYGHMKVEEPKTPFSETVDGDLEP 326
           G  G+ + S +   Q     +   T  PP +   H + EE     SE V GD+EP
Sbjct: 781 GRKGIETNSLQNHRQNCSATSHHTTTSPPTEGMTHGQGEEASFASSEIVSGDMEP 835


>02_05_1332 + 35758657-35758728,35758959-35760689
          Length = 600

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 24/77 (31%), Positives = 28/77 (36%), Gaps = 5/77 (6%)
 Frame = +3

Query: 120 KPSKGILKXSRSVDGSDGMPSCSKRAKEQRFDEMNIMETFHPPNKDYGHMKV----EEPK 287
           KP   ILK  R  D  +     SKR +    DE      F     D   M      EE  
Sbjct: 459 KPLNAILKRKREADSGNATDFGSKREEHSGGDEEGSQNDFRNIEDDIVGMNTEGNGEEAF 518

Query: 288 TPFSETVDGD-LEPNDE 335
            P  + V GD L P D+
Sbjct: 519 QPEDDVVYGDSLSPADD 535


>09_02_0327 - 7284829-7284889,7284946-7286126
          Length = 413

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = -2

Query: 555 HYLRHLLEPSAVEPVVMPGIHCNAFSFSSRTRYAFGVLPPAPPCP 421
           H L  L E + V     P   C + + S + R  FG  PP PP P
Sbjct: 15  HLLHPLPEHAEVSTFSPPLSPCPSPASSYKERIIFGAHPPPPPPP 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,253,398
Number of Sequences: 37544
Number of extensions: 366380
Number of successful extensions: 1061
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)