Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_L09
         (721 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12463| Best HMM Match : IPP-2 (HMM E-Value=1.2e-27)                 58   5e-09
SB_14689| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_28101| Best HMM Match : DiS_P_DiS (HMM E-Value=6.6)                 28   8.8  

>SB_12463| Best HMM Match : IPP-2 (HMM E-Value=1.2e-27)
          Length = 197

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 23/39 (58%), Positives = 31/39 (79%)
 Frame = +3

Query: 207 RFDEMNIMETFHPPNKDYGHMKVEEPKTPFSETVDGDLE 323
           ++DEMNIM T+HP +KDYGHMK+ EP TP+++  D D E
Sbjct: 31  QWDEMNIMMTYHPEDKDYGHMKINEPPTPYNKLKDPDGE 69


>SB_14689| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1900

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +3

Query: 186  SKRAKEQRFDEMNIMETFHPPNKDYGHMKVEEPKTPFSETV--DGDLEPNDE 335
            SK    Q   ++ I+E F  P  D+G  + + P    SET   + ++E ND+
Sbjct: 1226 SKMGSPQGRTQLQILEDFGDPEHDFGIFRKKTPAHVASETTHQEEEIEDNDK 1277


>SB_28101| Best HMM Match : DiS_P_DiS (HMM E-Value=6.6)
          Length = 334

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
 Frame = -2

Query: 561 CRHYLRHLLEPSAVEPVVMPGIHCNAFSFSSR--TRYAF-GVLPPAPPCPRHYRHRTPRT 391
           C  Y  H    S ++        C  F+ +S   +R  F G  PP PP P   + R+ RT
Sbjct: 137 CSRYGFHTFSRSQIQYYQFAERDCPEFNINSELSSRLGFSGEPPPPPPLPPQSKSRSKRT 196


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,909,282
Number of Sequences: 59808
Number of extensions: 411149
Number of successful extensions: 856
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)