Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_L09
         (721 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64680.2 68418.m08129 expressed protein                             29   3.1  
At5g64680.1 68418.m08128 expressed protein                             29   3.1  
At5g55720.1 68418.m06946 pectate lyase family protein similar to...    29   4.1  
At5g52200.1 68418.m06479 expressed protein                             29   4.1  

>At5g64680.2 68418.m08129 expressed protein 
          Length = 203

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 21/68 (30%), Positives = 34/68 (50%)
 Frame = +1

Query: 430 RSRRKYAESVSSSRRKGKCITMNSRHYNWLDS*WLKKMTKIMTTKPRSLPPDCQRWPSYC 609
           R+++K   SV++S +K   +T +SRH +   S   K M    T  P+S  P  +   S  
Sbjct: 118 RTQQKLVGSVTNSSKKSSNLTQSSRHKSGTRSSREKSMFSGFTETPKS--PKRKNSESSS 175

Query: 610 KKHTLASS 633
            KH  ++S
Sbjct: 176 GKHRSSTS 183


>At5g64680.1 68418.m08128 expressed protein 
          Length = 203

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 21/68 (30%), Positives = 34/68 (50%)
 Frame = +1

Query: 430 RSRRKYAESVSSSRRKGKCITMNSRHYNWLDS*WLKKMTKIMTTKPRSLPPDCQRWPSYC 609
           R+++K   SV++S +K   +T +SRH +   S   K M    T  P+S  P  +   S  
Sbjct: 118 RTQQKLVGSVTNSSKKSSNLTQSSRHKSGTRSSREKSMFSGFTETPKS--PKRKNSESSS 175

Query: 610 KKHTLASS 633
            KH  ++S
Sbjct: 176 GKHRSSTS 183


>At5g55720.1 68418.m06946 pectate lyase family protein similar to
           pectate lyase 1 GP:6606532 from [Musa acuminata]
          Length = 392

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/42 (35%), Positives = 16/42 (38%)
 Frame = -2

Query: 498 IHCNAFSFSSRTRYAFGVLPPAPPCPRHYRHRTPRTSAACSC 373
           I C  F F   T +AF    P PP  R         S A SC
Sbjct: 3   IVCTFFLFLLNTSFAFAFAIPKPPIVRRLSTTVTSNSTASSC 44


>At5g52200.1 68418.m06479 expressed protein
          Length = 191

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = +3

Query: 189 KRAKEQRFDEMNIMETFHPPNKDYGHMKVEEPKTPFSETVDGD 317
           KR + Q +DE NI+E     NK     K+ EPKTP+   +D D
Sbjct: 5   KRGRVQ-WDEANIVEI--ESNKPV-RQKITEPKTPYHPMMDDD 43


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,618,950
Number of Sequences: 28952
Number of extensions: 288629
Number of successful extensions: 755
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)