Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_L08
(800 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 207 2e-54
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 54 2e-08
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 50 4e-07
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 26 7.2
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 7.2
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 25 9.5
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma... 25 9.5
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 25 9.5
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 25 9.5
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 207 bits (505), Expect = 2e-54
Identities = 100/195 (51%), Positives = 128/195 (65%), Gaps = 1/195 (0%)
Frame = +2
Query: 218 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 397
NPLF RP++F IGQ IQP RDLSRFV+WP+YIR+QR++ +L RLKVPP I QF +TLD
Sbjct: 24 NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLD 83
Query: 398 KTTAKGLFKILEKYRPET-XXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLV 574
K TA +FK+L KYRPET +P ++ G N V L+
Sbjct: 84 KNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALI 143
Query: 575 EKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLXLTNV 754
E KKA+LV+IA DVDPIELV+FLPALC+KMGVPY IVK K+RLG ++H+KT L +T V
Sbjct: 144 EAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLGTVIHQKTAAVLAVTEV 203
Query: 755 ESGDRASFSKVVEXI 799
D+ + +V +
Sbjct: 204 REEDKNELASIVSAV 218
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 54.0 bits (124), Expect = 2e-08
Identities = 23/56 (41%), Positives = 34/56 (60%)
Frame = +2
Query: 539 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 706
+R G N TK + + ++ +V+A D +PIE++L LP LC VPY V K+ LG
Sbjct: 32 LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALG 87
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 50.0 bits (114), Expect = 4e-07
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Frame = +2
Query: 539 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVH 718
I G V K V K + LV++A D+ P++++ +P LC VPY K LG +
Sbjct: 54 ILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASN 113
Query: 719 RKTCT-CLXLTNVESGDRASFSKVVE 793
K T C+ + V G + SKV E
Sbjct: 114 TKRPTSCVMI--VPGGKKKDMSKVEE 137
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 332 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 433
KAVL LK P IN F + L + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 7.2
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -1
Query: 560 LCLCRIGWC 534
LCLC IGWC
Sbjct: 2326 LCLCYIGWC 2334
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 316 PHPAPEGCTSASSESAPSDQPIYPDTGQDY 405
PHP SA S ++P P+ P T +DY
Sbjct: 355 PHPRVFSANSAFSTTSPP--PLTPSTSRDY 382
>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 462
Score = 25.4 bits (53), Expect = 9.5
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -2
Query: 514 LIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKLVDRRGHFQTTL 344
L F L +S Q FP FS L+NL + ++ Q L + R +T+
Sbjct: 197 LSFSKGLEAASIVQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHRNQGASTV 253
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = +1
Query: 253 HWSGHSANSGLVQICKMAQVYPHPAPEGCTSASSESAPSDQPIYPDTGQDYS 408
++ + N + Q+ A YP+ + SAS S+P+ P T + S
Sbjct: 296 YFKENGLNYDIDQLISKAPSYPYSSSRPSASASLASSPTRSAFRPKTSETVS 347
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 542 RSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKM 664
+SG+ +T+ + +V I + +D +E LP LC K+
Sbjct: 378 KSGSRLLTRRLCAPSTNIVEINNRLDLVEKFKLLPELCSKV 418
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,982,196
Number of Sequences: 5004
Number of extensions: 55962
Number of successful extensions: 172
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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