Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_L08
(800 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.) 234 7e-62
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24) 136 3e-32
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27) 56 3e-08
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15) 45 6e-05
SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45) 35 0.088
SB_6273| Best HMM Match : MAM (HMM E-Value=0) 29 5.8
SB_45328| Best HMM Match : DUF1162 (HMM E-Value=6.1e-09) 28 7.7
SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74) 28 7.7
SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05) 28 7.7
>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 234 bits (572), Expect = 7e-62
Identities = 108/194 (55%), Positives = 135/194 (69%)
Frame = +2
Query: 218 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 397
NPL EKRP+NF IG IQP RDLSRFVRWP+Y+++QRQK++L +RLKVPP INQFTQ LD
Sbjct: 29 NPLIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALD 88
Query: 398 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 577
+ + LFK+L KYRPET +P ++ G N +T LVE
Sbjct: 89 RQSTVQLFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVE 148
Query: 578 KKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLXLTNVE 757
KKAQLVVIAHDVDPIE+V++LPALCRKM VPYCIVKGK+RLG +VH+K T L +T V
Sbjct: 149 NKKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHKKNATALCITGVR 208
Query: 758 SGDRASFSKVVEXI 799
D+ S + ++E +
Sbjct: 209 QEDKNSLNNLIESV 222
>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
Length = 172
Score = 136 bits (328), Expect = 3e-32
Identities = 64/128 (50%), Positives = 81/128 (63%)
Frame = +2
Query: 416 LFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVEKKKAQL 595
LFK+L KYRPET +P ++ G N +T LVE KKAQL
Sbjct: 4 LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQL 63
Query: 596 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLXLTNVESGDRAS 775
VVIAHDVDPIE+V++LPALCRKM VPYCIVKGK+RLG +VH+K T L +T V D+ S
Sbjct: 64 VVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHKKNATALCITGVRQEDKNS 123
Query: 776 FSKVVEXI 799
+ ++E +
Sbjct: 124 LNNLIESV 131
>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
Length = 187
Score = 56.4 bits (130), Expect = 3e-08
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Frame = +2
Query: 539 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 712
+R G N TK + + A+ +V+A D +P+E++L LP LC VPY V+ K+ LG
Sbjct: 94 LRKGANEATKCLNRGIAEFIVMAADTEPLEILLHLPLLCEDKNVPYVFVRSKAALGRATG 153
Query: 713 VHRKTCTCLXLTN 751
V R C N
Sbjct: 154 VTRPVIACAVTVN 166
>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
Length = 544
Score = 45.2 bits (102), Expect = 6e-05
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +2
Query: 527 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGK 694
+ T+R G V K + K + V++A DV PI+++ +P +C +PY V K
Sbjct: 95 KAKTLRRGVKEVVKALRKGEKGFVILAGDVSPIDVISHIPVMCEDSKIPYAYVPSK 150
>SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)
Length = 427
Score = 34.7 bits (76), Expect = 0.088
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +2
Query: 548 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 706
G + K ++K++A L +++++ D V + ALC + G+P V +LG
Sbjct: 41 GLHEAAKSLDKREAHLCILSNNCDEAMYVKLVEALCAEHGIPLLKVDDSKKLG 93
>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
Length = 4272
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 627 SWFSSCQRYAVKWAYHTALSRASPASVHLYTARHAHAXL*QMWSL 761
+WF V+W YH + +S S+++YT L ++WS+
Sbjct: 2891 TWFKPSSTCRVRWFYH--MMGSSMGSLNVYTRTSMSGPLSRVWSV 2933
>SB_45328| Best HMM Match : DUF1162 (HMM E-Value=6.1e-09)
Length = 1508
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = -1
Query: 731 CMSCGVQVHRGGTCP*--QCSMVRPFYGITLAGREPAQW 621
C+ C +Q H G + MVRP+ G EPA W
Sbjct: 1190 CLFCRLQSHEDGVTVDFSRMKMVRPYEGAIRRSFEPAMW 1228
>SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74)
Length = 437
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 783 FEKEARSPDSTFVRXKHVHVLRCTSAPRRDLPLT 682
F + +S R +H H+ RCTSAP P T
Sbjct: 61 FNNFTNTTESWPQRKRHFHLRRCTSAPEPSSPNT 94
>SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)
Length = 212
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 529 PLWWRLIFLGNLSFSSFPQPLFPG 458
P WW ++F+G + FS L+PG
Sbjct: 56 PKWWFMLFIGTIVFSIGYLVLYPG 79
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,352,916
Number of Sequences: 59808
Number of extensions: 448841
Number of successful extensions: 1326
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1324
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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