Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_L08
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   5.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.8  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   5.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   5.8  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/38 (26%), Positives = 16/38 (42%)
 Frame = -3

Query: 258 PMAKFFGLFSKRGFTIFLGSTFLTTNGAAATFFPTFFL 145
           P+ K +G ++  GF       FLT +     F    F+
Sbjct: 189 PLLKVWGRYTTEGFLTTCSFDFLTDDEDTKVFVTCIFI 226


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 517 STKEAQHHPIRHKHSH 564
           ST    HH + H HSH
Sbjct: 410 STPGPHHHTMGHGHSH 425


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 11/42 (26%), Positives = 15/42 (35%)
 Frame = -3

Query: 258 PMAKFFGLFSKRGFTIFLGSTFLTTNGAAATFFPTFFLGXFC 133
           P+   +G F   GF       +LT       F  T F   +C
Sbjct: 180 PVMGVWGRFVPEGFLTSCSFDYLTDTNEIRIFVATIFTFSYC 221


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/38 (26%), Positives = 16/38 (42%)
 Frame = -3

Query: 258 PMAKFFGLFSKRGFTIFLGSTFLTTNGAAATFFPTFFL 145
           P+ K +G ++  GF       FLT +     F    F+
Sbjct: 189 PLLKVWGRYTTEGFLTTCSFDFLTDDEDTKVFVTCIFI 226


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,295
Number of Sequences: 438
Number of extensions: 4028
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)