Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_L04
         (432 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25140.1 68416.m03139 glycosyl transferase family 8 protein c...    27   4.1  
At3g02350.1 68416.m00218 glycosyl transferase family 8 protein c...    27   5.5  

>At3g25140.1 68416.m03139 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 559

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 186 FTPYHRYSYYNNISI*VKLETFNPK 260
           F  +HRY+ Y N S  +  E FNPK
Sbjct: 413 FGSFHRYAQYMNFSHPLIKEKFNPK 437


>At3g02350.1 68416.m00218 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 561

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +3

Query: 150 NLDFK-RTSLNKFFTPYHRYSYYNNISI*VKLETFNPKLTLTYFS*DTF 293
           NLD K   ++   F  +HRY  Y N S  +  E FNP      F  + F
Sbjct: 402 NLDGKVNGAVETCFGSFHRYGQYLNFSHPLIKENFNPSACAWAFGMNIF 450


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,714,930
Number of Sequences: 28952
Number of extensions: 76574
Number of successful extensions: 88
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)