Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_L03
         (507 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    25   4.9  
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po...    25   6.5  

>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 22  CPLGFTFIILFCHIDTYKIARSCCVKCAI 108
           CP+   FI +FC  +T+  A + C+K  +
Sbjct: 128 CPI--VFIAIFCFFETWTQAVAQCIKVTV 154


>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -3

Query: 355 KITVDXXXXNTIQFTRIILDY*KTHLYV*TQKSITGWHRALFR*LFSNN-HLYNS 194
           +I +D      +Q   + +D+  + L +   K+  GW  +LF   F+N+ ++Y +
Sbjct: 465 RIIIDSDDPYRLQSISVDVDFAASTLVINRAKAQMGWFNSLFTPSFANDIYIYGN 519


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,187,023
Number of Sequences: 5004
Number of extensions: 18096
Number of successful extensions: 28
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)