Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_L03
         (507 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25880.1 68415.m03106 serine/threonine protein kinase, putati...    28   3.1  
At4g32830.1 68417.m04669 protein kinase, putative similar to pro...    28   4.2  

>At2g25880.1 68415.m03106 serine/threonine protein kinase, putative
           similar to serine/threonine kinase Ayk1 [Mus musculus]
           gi|1763647|gb|AAB62982
          Length = 282

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
 Frame = -3

Query: 241 RALFR*LFSNNHLYNSKCRSQIITLKLNYTIKLKWKS*W----RLIQYQSHILHSTNVQF 74
           + L R  F + +L   K    I+ LK+ +  +L+         R ++ QSH+ H   ++ 
Sbjct: 23  KPLGRGKFGHVYLAREKRSDHIVALKVLFKAQLQQSQVEHQLRREVEIQSHLRHPNILRL 82

Query: 73  YMYLYDKTK 47
           Y Y YD+ +
Sbjct: 83  YGYFYDQKR 91


>At4g32830.1 68417.m04669 protein kinase, putative similar to
           protein kinase p46XlEg22 [Xenopus laevis]
           gi|609280|emb|CAA78914; contains protein kinase domain,
           Pfam:PF00069
          Length = 294

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
 Frame = -3

Query: 241 RALFR*LFSNNHLYNSKCRSQIITLKLNYTIKLKWKS*W----RLIQYQSHILHSTNVQF 74
           + L R  F + +L   K  + ++ LK+ +  +L+         R ++ QSH+ H   ++ 
Sbjct: 35  KPLGRGKFGHVYLAREKRSNHVVALKVLFKSQLQQSQVEHQLRREVEIQSHLRHPNILRL 94

Query: 73  YMYLYDKTK 47
           Y Y YD+ +
Sbjct: 95  YGYFYDQKR 103


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,813,480
Number of Sequences: 28952
Number of extensions: 84370
Number of successful extensions: 142
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)