Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_L02
         (675 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21435| Best HMM Match : DUF846 (HMM E-Value=4.3e-35)               156   2e-38
SB_12137| Best HMM Match : rve (HMM E-Value=0.00054)                   31   1.1  
SB_37321| Best HMM Match : Pkinase (HMM E-Value=2.4e-27)               30   1.5  
SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  

>SB_21435| Best HMM Match : DUF846 (HMM E-Value=4.3e-35)
          Length = 323

 Score =  156 bits (378), Expect = 2e-38
 Identities = 63/98 (64%), Positives = 83/98 (84%), Gaps = 2/98 (2%)
 Frame = +1

Query: 313 DDDTIAFGEEDNA--NKQFVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVILLL 486
           +D  + FG+E+ A   ++F HPY+ FFHL FR S++I Y+LCGWFSDSFI +FV+++LLL
Sbjct: 162 EDVALNFGDEEEALSRRKFRHPYVSFFHLFFRISSVIAYLLCGWFSDSFITNFVVIVLLL 221

Query: 487 SADFWTVKNISGRLLVGLRWWNYVDDNGKSHWVFEARQ 600
           S DFWTVKN+SGRLLVGLRWWNYVD++G SHWVFE+++
Sbjct: 222 SCDFWTVKNVSGRLLVGLRWWNYVDEDGNSHWVFESKK 259


>SB_12137| Best HMM Match : rve (HMM E-Value=0.00054)
          Length = 338

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -3

Query: 628 GGSRSC*PGSDGPRTPSATCRCRPHS 551
           GG     PG  G RTP   CRC  HS
Sbjct: 313 GGGGGGSPGLSGRRTPRGRCRCTQHS 338


>SB_37321| Best HMM Match : Pkinase (HMM E-Value=2.4e-27)
          Length = 592

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = -2

Query: 128 HIQSKSLSNIKCIIYVNH*IKFIALILLFVYLSSHLL 18
           H+QS ++ NI   I +N  I  IALI++ V  S +LL
Sbjct: 347 HLQSPTIININITIMINIIIIIIALIMIMVIDSRYLL 383


>SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -3

Query: 661 PRGTASGPSRTGGSRSC*PGSDGPRTPSATCRCRPH 554
           PRG A  PS   G  S   G+ GP +  +  R  PH
Sbjct: 698 PRGRAESPSNAHGRASSPSGTRGPVSGPSGARGSPH 733


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,190,360
Number of Sequences: 59808
Number of extensions: 444427
Number of successful extensions: 1045
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)