Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_L02
(675 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC008430-1|AAH08430.1| 205|Homo sapiens family with sequence si... 151 2e-36
AF223467-1|AAF64142.1| 205|Homo sapiens NPD008 protein protein. 148 2e-35
AF151906-1|AAD34143.1| 181|Homo sapiens CGI-148 protein protein. 148 2e-35
BC011952-1|AAH11952.1| 276|Homo sapiens family with sequence si... 140 3e-33
AB074181-1|BAE45741.1| 164|Homo sapiens putative protein produc... 140 5e-33
BC067364-1|AAH67364.1| 871|Homo sapiens PRP40 pre-mRNA processi... 31 2.8
BC050398-1|AAH50398.1| 788|Homo sapiens PRPF40B protein protein. 31 2.8
>BC008430-1|AAH08430.1| 205|Homo sapiens family with sequence
similarity 18, member B protein.
Length = 205
Score = 151 bits (367), Expect = 2e-36
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 10/128 (7%)
Frame = +1
Query: 313 DDDTIAFGEEDNANK----QFVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVIL 480
+D ++ EE+ N+ + HP FFHL FR SAIIVY+LCG S SFI V +IL
Sbjct: 11 EDVSLFDAEEETTNRPRKAKIRHPVASFFHLFFRVSAIIVYLLCGLLSSSFITCMVTIIL 70
Query: 481 LLSADFWTVKNISGRLLVGLRWWNYVDDNGKSHWVFEARQSRVNRN------ESRLFWMG 642
LLS DFW VKN++GRL+VGLRWWN++D++GKSHWVFE+R+ N ESR+FW+G
Sbjct: 71 LLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKESSQENKTVSEAESRIFWLG 130
Query: 643 LTLCPLVW 666
L CP++W
Sbjct: 131 LIACPVLW 138
>AF223467-1|AAF64142.1| 205|Homo sapiens NPD008 protein protein.
Length = 205
Score = 148 bits (359), Expect = 2e-35
Identities = 67/128 (52%), Positives = 88/128 (68%), Gaps = 10/128 (7%)
Frame = +1
Query: 313 DDDTIAFGEEDNANK----QFVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVIL 480
+D ++ EE+ N+ + HP FFHL FR SAIIVY+LC S SFI V +IL
Sbjct: 11 EDVSLFDAEEETTNRPRKAKIRHPVASFFHLFFRVSAIIVYLLCELLSSSFITCMVTIIL 70
Query: 481 LLSADFWTVKNISGRLLVGLRWWNYVDDNGKSHWVFEARQSRVNRN------ESRLFWMG 642
LLS DFW VKN++GRL+VGLRWWN++D++GKSHWVFE+R+ N ESR+FW+G
Sbjct: 71 LLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKESSQENKTVSEAESRIFWLG 130
Query: 643 LTLCPLVW 666
L CP++W
Sbjct: 131 LIACPVLW 138
>AF151906-1|AAD34143.1| 181|Homo sapiens CGI-148 protein protein.
Length = 181
Score = 148 bits (359), Expect = 2e-35
Identities = 67/128 (52%), Positives = 88/128 (68%), Gaps = 10/128 (7%)
Frame = +1
Query: 313 DDDTIAFGEEDNANK----QFVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVIL 480
+D ++ EE+ N+ + HP FFHL FR SAIIVY+LC S SFI V +IL
Sbjct: 11 EDVSLFDAEEETTNRPRKAKIRHPVASFFHLFFRVSAIIVYLLCELLSSSFITCMVTIIL 70
Query: 481 LLSADFWTVKNISGRLLVGLRWWNYVDDNGKSHWVFEARQSRVNRN------ESRLFWMG 642
LLS DFW VKN++GRL+VGLRWWN++D++GKSHWVFE+R+ N ESR+FW+G
Sbjct: 71 LLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKESSQENKTVSEAESRIFWLG 130
Query: 643 LTLCPLVW 666
L CP++W
Sbjct: 131 LIACPVLW 138
>BC011952-1|AAH11952.1| 276|Homo sapiens family with sequence
similarity 18, member B2 protein.
Length = 276
Score = 140 bits (340), Expect = 3e-33
Identities = 68/132 (51%), Positives = 87/132 (65%), Gaps = 14/132 (10%)
Frame = +1
Query: 313 DDDTIAFG----EEDNANK----QFVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFV 468
+DDT A EE+ N+ + HP FFHL FR SAIIV +LC S SFI V
Sbjct: 7 NDDTEAVSLFDAEEETTNRPRKAKIRHPVASFFHLFFRVSAIIVCLLCELLSSSFITCMV 66
Query: 469 LVILLLSADFWTVKNISGRLLVGLRWWNYVDDNGKSHWVFEARQSRVNRN------ESRL 630
+ILLLS DFW VKN++GRL+VGLRWWN++D++GKSHWVFE+R+ N ESR+
Sbjct: 67 TIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKESSQENKTVSEAESRI 126
Query: 631 FWMGLTLCPLVW 666
FW+GL C ++W
Sbjct: 127 FWLGLIACSVLW 138
>AB074181-1|BAE45741.1| 164|Homo sapiens putative protein product
of Nbla10383 protein.
Length = 164
Score = 140 bits (338), Expect = 5e-33
Identities = 64/128 (50%), Positives = 85/128 (66%), Gaps = 10/128 (7%)
Frame = +1
Query: 313 DDDTIAFGEEDNANK----QFVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVIL 480
+D ++ EE+ N+ + HP FFHL FR SAIIV +LC S SFI V +IL
Sbjct: 11 EDVSLFDAEEETTNRPRKAKIRHPVASFFHLFFRVSAIIVCLLCELLSSSFITCMVTIIL 70
Query: 481 LLSADFWTVKNISGRLLVGLRWWNYVDDNGKSHWVFEARQSRVNRN------ESRLFWMG 642
LLS DFW VKN++GRL+VGLRWWN++D++GK HWVFE+R+ N ESR+FW+G
Sbjct: 71 LLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKGHWVFESRKESSQENKTVSEAESRIFWLG 130
Query: 643 LTLCPLVW 666
L C ++W
Sbjct: 131 LIACSVLW 138
>BC067364-1|AAH67364.1| 871|Homo sapiens PRP40 pre-mRNA processing
factor 40 homolog B (S. cerevisiae) protein.
Length = 871
Score = 31.5 bits (68), Expect = 2.8
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +3
Query: 549 ELCGRQRQVALGVRGPSEPGQQEREPPVLDGPDAVPLGLV 668
E G+Q+Q P P Q PPV GP VP GL+
Sbjct: 177 EAAGKQQQQLPQTLQPQPPQPQPDPPPVPPGPTPVPTGLL 216
>BC050398-1|AAH50398.1| 788|Homo sapiens PRPF40B protein protein.
Length = 788
Score = 31.5 bits (68), Expect = 2.8
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +3
Query: 549 ELCGRQRQVALGVRGPSEPGQQEREPPVLDGPDAVPLGLV 668
E G+Q+Q P P Q PPV GP VP GL+
Sbjct: 177 EAAGKQQQQLPQTLQPQPPQPQPDPPPVPPGPTPVPTGLL 216
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,870,472
Number of Sequences: 237096
Number of extensions: 2248861
Number of successful extensions: 9025
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9020
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7615267504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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