Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_L02
         (675 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58755-12|ABJ99069.1|  205|Caenorhabditis elegans Hypothetical p...   119   2e-27
U58755-11|AAB00701.1|  247|Caenorhabditis elegans Hypothetical p...   119   2e-27
AF038605-2|AAB92020.1|  698|Caenorhabditis elegans Hypothetical ...    29   3.0  
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    27   9.2  

>U58755-12|ABJ99069.1|  205|Caenorhabditis elegans Hypothetical
           protein C34D4.4b protein.
          Length = 205

 Score =  119 bits (287), Expect = 2e-27
 Identities = 51/106 (48%), Positives = 73/106 (68%), Gaps = 2/106 (1%)
 Frame = +1

Query: 355 KQFVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVILLLSADFWTVKNISGRLLV 534
           + F  P IV  HL F+ +A+  Y    +F++SFI  F++++ LLS DFWTVKNI+GRLLV
Sbjct: 26  QMFGKPTIVLAHLSFKGAALFFYFFANFFTNSFIVQFLVILTLLSMDFWTVKNITGRLLV 85

Query: 535 GLRWWNYVDDNGKSHWVFEARQ--SRVNRNESRLFWMGLTLCPLVW 666
           GLRWWN+VD +G +HW FE+ +  +R    + R+FW+GL + P  W
Sbjct: 86  GLRWWNFVDADGNNHWKFESAKDMTRFATIDRRVFWLGLVVGPAAW 131


>U58755-11|AAB00701.1|  247|Caenorhabditis elegans Hypothetical
           protein C34D4.4a protein.
          Length = 247

 Score =  119 bits (287), Expect = 2e-27
 Identities = 51/106 (48%), Positives = 73/106 (68%), Gaps = 2/106 (1%)
 Frame = +1

Query: 355 KQFVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVILLLSADFWTVKNISGRLLV 534
           + F  P IV  HL F+ +A+  Y    +F++SFI  F++++ LLS DFWTVKNI+GRLLV
Sbjct: 68  QMFGKPTIVLAHLSFKGAALFFYFFANFFTNSFIVQFLVILTLLSMDFWTVKNITGRLLV 127

Query: 535 GLRWWNYVDDNGKSHWVFEARQ--SRVNRNESRLFWMGLTLCPLVW 666
           GLRWWN+VD +G +HW FE+ +  +R    + R+FW+GL + P  W
Sbjct: 128 GLRWWNFVDADGNNHWKFESAKDMTRFATIDRRVFWLGLVVGPAAW 173


>AF038605-2|AAB92020.1|  698|Caenorhabditis elegans Hypothetical
           protein C02B10.5 protein.
          Length = 698

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = -2

Query: 539 SPTSNRPLIFLTVQKSADSSRMTNTKLAMNESENHPHRMYTIIAEHRNTRWKNTM 375
           +P SN  L     ++  +   M   K+  +E++N+P R   ++A   N R  NT+
Sbjct: 286 NPPSNASLKRRATEEFGNDGPMKQAKIEGSENDNNPMRKLEMMANSSNFRGGNTI 340


>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
            F25H8.3 protein.
          Length = 2165

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 474  HSTAVCRLLDCQEY*WSVTSWT*VVELCGRQRQVALGVRGPSEPGQQ 614
            +S A C  + C  Y W+VT W+   + C R ++    V   S  G++
Sbjct: 1740 NSVANCFPVACPAYRWNVTPWSKCKDECARGQKQTRRVHCISTSGKR 1786


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
            protein F25H8.3 protein.
          Length = 2165

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 474  HSTAVCRLLDCQEY*WSVTSWT*VVELCGRQRQVALGVRGPSEPGQQ 614
            +S A C  + C  Y W+VT W+   + C R ++    V   S  G++
Sbjct: 1740 NSVANCFPVACPAYRWNVTPWSKCKDECARGQKQTRRVHCISTSGKR 1786


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,785,115
Number of Sequences: 27780
Number of extensions: 337788
Number of successful extensions: 894
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)