Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_L02
(675 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g09330.1 68414.m01044 expressed protein contains 3 transmembr... 107 7e-24
At1g16180.1 68414.m01938 TMS membrane family protein / tumour di... 33 0.23
At4g06676.1 68417.m01071 expressed protein ; expression supporte... 29 3.8
At1g27040.2 68414.m03296 nitrate transporter, putative contains ... 28 5.0
At1g27040.1 68414.m03297 nitrate transporter, putative contains ... 28 5.0
At1g07010.1 68414.m00746 calcineurin-like phosphoesterase family... 28 5.0
At5g45330.1 68418.m05564 expressed protein ; expression supporte... 28 6.6
At5g42360.1 68418.m05158 kelch repeat-containing F-box family pr... 28 6.6
At5g42350.1 68418.m05157 kelch repeat-containing F-box family pr... 28 6.6
At3g27925.1 68416.m03484 DegP protease, putative SP:022609; almo... 28 6.6
At2g34720.1 68415.m04264 CCAAT-binding transcription factor (CBF... 28 6.6
At2g18520.1 68415.m02158 pentatricopeptide (PPR) repeat-containi... 28 6.6
At2g20210.1 68415.m02363 leucine-rich repeat family protein cont... 27 8.7
>At1g09330.1 68414.m01044 expressed protein contains 3 transmembrane
domains; contains Pfam profile PF05832: Eukaryotic
protein of unknown function
Length = 186
Score = 107 bits (257), Expect = 7e-24
Identities = 47/108 (43%), Positives = 70/108 (64%), Gaps = 4/108 (3%)
Frame = +1
Query: 355 KQFVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVILLLSADFWTVKNISGRLLV 534
+ + +P FH++F+ +A+ YIL F +SF+ FV+ +LL + DFW VKN+SGR+LV
Sbjct: 12 ENYANPRTCLFHVLFKGAALAFYILSALFFNSFVIIFVVTVLLAALDFWVVKNVSGRILV 71
Query: 535 GLRWWNYVDDNGKSHWVFEARQ----SRVNRNESRLFWMGLTLCPLVW 666
GLRWWN ++D G+S W FE+ +R+N+ +S LFW L L W
Sbjct: 72 GLRWWNEINDLGESVWKFESLDQESLARMNKKDSWLFWWTLYLAAAAW 119
>At1g16180.1 68414.m01938 TMS membrane family protein / tumour
differentially expressed (TDE) family protein contains
Pfam domain, PF03348: TMS membrane protein/tumour
differentially expressed protein (TDE)
Length = 412
Score = 32.7 bits (71), Expect = 0.23
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 268 LMNHPAMNSATVPLLDDDTIAFGEEDNANKQFVHPYIVFFHLVFRCSAII-VYILCGW 438
L++ P A PLL D A +E+ NK+ V FFH++F +++ +L GW
Sbjct: 308 LLSPPDSPRAEKPLLPIDGKAEEKEEKENKKPVSYSYAFFHIIFSLASMYSAMLLTGW 365
>At4g06676.1 68417.m01071 expressed protein ; expression supported
by MPSS
Length = 258
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -2
Query: 515 IFLTVQKSADSSRMTNTKLAMNESENHPHRMYTIIAEHRNTRWKNT 378
+FL + S DS +N + A+ S+ H H A + T KNT
Sbjct: 209 VFLVILSSTDSC-FSNFRAALRSSDTHAHGRRHAAANSKATDMKNT 253
>At1g27040.2 68414.m03296 nitrate transporter, putative contains
Pfam profile: PF00854 POT family; similar to nitrate
transporter (NTL1) GI:3377517 [Arabidopsis thaliana]
Length = 563
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/34 (29%), Positives = 23/34 (67%)
Frame = +1
Query: 397 FRCSAIIVYILCGWFSDSFIASFVLVILLLSADF 498
F +A ++ +L G+ +D+F ++FV+ ++ S +F
Sbjct: 73 FMATAFLLALLGGFLADAFFSTFVIFLISASIEF 106
>At1g27040.1 68414.m03297 nitrate transporter, putative contains
Pfam profile: PF00854 POT family; similar to nitrate
transporter (NTL1) GI:3377517 [Arabidopsis thaliana]
Length = 567
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/34 (29%), Positives = 23/34 (67%)
Frame = +1
Query: 397 FRCSAIIVYILCGWFSDSFIASFVLVILLLSADF 498
F +A ++ +L G+ +D+F ++FV+ ++ S +F
Sbjct: 77 FMATAFLLALLGGFLADAFFSTFVIFLISASIEF 110
>At1g07010.1 68414.m00746 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 calcineurin-like
phosphoesterase
Length = 389
Score = 28.3 bits (60), Expect = 5.0
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 562 DNGKSHWVFEARQSRVNRNESRLFW 636
D +W+FE+RQ + +R S+ +W
Sbjct: 173 DKAFRNWIFESRQWKEDRRSSQTYW 197
>At5g45330.1 68418.m05564 expressed protein ; expression supported
by MPSS
Length = 571
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -2
Query: 545 HLSPTSNRPLIFLTVQKSADSSRMTNTKLAMNESENHPHR 426
+LSP S L +QK S+ K+ + NHPHR
Sbjct: 297 NLSPPSEAQLSAPNIQKIYPSAPQAIGKVVYDPQSNHPHR 336
>At5g42360.1 68418.m05158 kelch repeat-containing F-box family
protein contains Pfam profiles PF01344: Kelch motif,
PF00646: F-box domain
Length = 563
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 523 RLLVGLRWWNYVDDNG-KSHWVFEARQSRVNRNESRLF 633
RL V + N D NG KSH + + R+NRN S+ F
Sbjct: 317 RLSVRRQNRNSADQNGTKSHRLIRQKLDRLNRNSSKRF 354
>At5g42350.1 68418.m05157 kelch repeat-containing F-box family
protein contains Pfam profiles PF01344: Kelch motif,
PF00646: F-box domain
Length = 563
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 523 RLLVGLRWWNYVDDNG-KSHWVFEARQSRVNRNESRLF 633
RL V + N D NG KSH + + R+NRN S+ F
Sbjct: 317 RLSVRRQNRNSADQNGTKSHRLIRQKLDRLNRNSSKRF 354
>At3g27925.1 68416.m03484 DegP protease, putative SP:022609; almost
identical to DegP protease precursor GB:AF028842 from
[Arabidopsis thaliana] (J. Biol. Chem. 273 (12),
7094-7098 (1998))
Length = 439
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -2
Query: 593 ASNTQCDLPLSST*FHHLSPTSNRPLIFLTVQKSADSS 480
A+ T C L LSST F H P+S+ L+ +S+ S
Sbjct: 2 ATTTSCSLLLSSTLFLHSPPSSHLSFFNLSSSRSSPIS 39
>At2g34720.1 68415.m04264 CCAAT-binding transcription factor
(CBF-B/NF-YA) family protein contains Pfam profile:
PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
subunit B
Length = 198
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +3
Query: 390 PGVPMLCDNCVHPVWVVLRLIHCKLRISHSTA 485
PGVP+ CD PV+V + H LR S A
Sbjct: 87 PGVPLQCDAVEEPVFVNAKQYHGILRRRQSRA 118
>At2g18520.1 68415.m02158 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 418
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -2
Query: 539 SPTSNRPLIFLTVQKSADSSRMTNTKLAMNESENHP 432
SP S+R + LTVQ+ A S R ++ + + +N+P
Sbjct: 62 SPLSSRYAMELTVQRLAKSQRFSDIEALIESHKNNP 97
>At2g20210.1 68415.m02363 leucine-rich repeat family protein
contains leucine rich repeat (LRR) domains, Pfam:PF00560
Length = 604
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 441 LRLIHCKLRISHSTAVCRLL 500
L LIHCKL +S +A+C L
Sbjct: 233 LELIHCKLSLSSISAICTSL 252
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,571,947
Number of Sequences: 28952
Number of extensions: 298602
Number of successful extensions: 629
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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