Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_L01
         (346 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI000155D07E Cluster: PREDICTED: similar to zinc finge...    30   9.2  

>UniRef50_UPI000155D07E Cluster: PREDICTED: similar to zinc finger
           protein 185 (LIM domain); n=1; Ornithorhynchus
           anatinus|Rep: PREDICTED: similar to zinc finger protein
           185 (LIM domain) - Ornithorhynchus anatinus
          Length = 991

 Score = 30.3 bits (65), Expect = 9.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 21  VH*QSTKCSNCSSSLASWPSRRLSPASFSA 110
           +H  +  C  C S  +SWP RR  PA   A
Sbjct: 857 IHRDTVHCLGCRSGPSSWPRRRPGPAGSKA 886


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,905,870
Number of Sequences: 1657284
Number of extensions: 1022435
Number of successful extensions: 3594
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3594
length of database: 575,637,011
effective HSP length: 89
effective length of database: 428,138,735
effective search space used: 10703468375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)