Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_L01
         (346 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61151-1|AAB41306.1|   45|Tribolium castaneum TATH1 protein.           22   1.5  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    20   8.2  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          20   8.2  

>U61151-1|AAB41306.1|   45|Tribolium castaneum TATH1 protein.
          Length = 45

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 84 AAKARKQAKMNSLN 43
          AA AR++ +MNSLN
Sbjct: 1  AANARERRRMNSLN 14


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 19.8 bits (39), Expect = 8.2
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 91  AQRPSQLVHGSRRIHRARRGCLHR 162
           A   SQLV   R  HR++  C  R
Sbjct: 91  AYTSSQLVELEREFHRSKYLCRPR 114


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 19.8 bits (39), Expect = 8.2
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 91  AQRPSQLVHGSRRIHRARRGCLHR 162
           A   SQLV   R  HR++  C  R
Sbjct: 111 AYTSSQLVELEREFHRSKYLCRPR 134


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,167
Number of Sequences: 336
Number of extensions: 249
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6770240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)