Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_L01
         (346 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0562 + 4126368-4128196,4128517-4128715,4128827-4128886,412...    27   3.0  
03_05_1042 - 29893649-29893721,29893960-29894033,29894111-298941...    26   9.1  

>01_01_0562 +
           4126368-4128196,4128517-4128715,4128827-4128886,
           4129129-4129233,4129987-4130127,4130223-4130285,
           4130925-4131152,4131250-4131333,4132000-4132157,
           4132252-4132777,4133641-4133700,4133904-4134026,
           4134906-4135181,4135282-4135347,4135500-4135631,
           4135977-4136798,4137026-4137306,4137564-4137796,
           4138022-4138260,4138367-4138558,4138808-4139080,
           4139186-4139332
          Length = 2078

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 100 PSQLVHGSRRIHRARRGCLHRSAG 171
           P  L+H SRR    + GC+H S G
Sbjct: 14  PPPLLHPSRRRRHRQGGCIHTSPG 37


>03_05_1042 -
           29893649-29893721,29893960-29894033,29894111-29894179,
           29894333-29894438,29894548-29894664,29895412-29895527,
           29895612-29895698,29897281-29897309,29897914-29898169
          Length = 308

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +3

Query: 9   NSEVVH*QSTKCSNCSSSLASWPSRRLSPA 98
           N E  H + T C NC  S    P+ R  PA
Sbjct: 192 NGEDDHIRETHCQNCGISSRLTPAMRRGPA 221


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,079,842
Number of Sequences: 37544
Number of extensions: 31242
Number of successful extensions: 120
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)