Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_K24
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    31   0.13 
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    26   3.7  
SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual    26   3.7  
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    26   4.8  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    26   4.8  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    25   6.4  
SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces...    25   6.4  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.5  
SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr 1|||Ma...    25   8.5  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    25   8.5  

>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +3

Query: 15  PSPTNTNMKTFVILFGLVAVSVAAPQSPTEPIPILKQESNIEPDGSY 155
           PS TN N+ T  ++   V V  AAP S T     + Q +   P G +
Sbjct: 770 PSVTNNNVATQPVIASTVPVQTAAPSSQTAVPQTIHQSNAFTPRGKH 816


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 300 IANENGFQPQGSHLPTPPPIPEVIQRALAYLATAPP 407
           I +++   P G  LP PP I E+I ++ +Y+A   P
Sbjct: 23  ITDQSSSVPAGVILP-PPAIREIIDKSASYVARNGP 57


>SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 21/63 (33%), Positives = 30/63 (47%)
 Frame = +1

Query: 145 MGPTNTLMRLEMVSPLPSEALSRTLALKNLL*RLKVNSSTQAKTVVLSSCPTSPTRMASS 324
           +GP   L R +M+  L SE LS    +KN        +   A + + SS P+SP R  S+
Sbjct: 184 LGPGEILRRKDMLEQLGSEFLSFKRLVKN---ANSPVAPPSASSQLNSSNPSSPFRPLSA 240

Query: 325 LRD 333
             D
Sbjct: 241 STD 243


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = -2

Query: 417 FQVVGERWRGMRERAG*LQGLG--VVWVNEIPE 325
           F   G  W G+R     +QG+G   +W++ I E
Sbjct: 61  FMYCGGTWNGIRNHLDYIQGMGFDAIWISPIFE 93


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 500 IGISNSTRITELALFFLNKLTEYL 429
           I +S S  +T+L +  LN+LT+Y+
Sbjct: 236 IKLSPSVNVTQLVVAMLNRLTDYV 259


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
 Frame = +3

Query: 321 QPQGSHLPTPPPIPEVIQRA--LAYLATAPPQP 413
           Q QGS  P PPP+P  I     +  + T  P P
Sbjct: 350 QVQGSRPPPPPPMPAPIYNVPNVPTVPTVSPNP 382


>SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 143

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 336 HLPTPPPIPEVIQRALAYLATAPPQ 410
           HLP PP + +V  +  + L   PPQ
Sbjct: 99  HLPVPPDLAKVSLKETSSLEELPPQ 123


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/30 (33%), Positives = 22/30 (73%)
 Frame = +1

Query: 475 ILVEFEMPIYFLTYLSNFRYSFLYFCTELF 564
           +L+ F   ++FL++  +F +SFL+F +++F
Sbjct: 116 LLLFFFFLLFFLSF--SFSFSFLFFLSQIF 143


>SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 283 VPPSSLGYWN*PSTSKAGSSAPMF 212
           +PPSS+GY   PS+   G  + MF
Sbjct: 137 LPPSSIGYVLPPSSLANGEGSSMF 160


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 86  CSYRHRHKSEENNK 45
           CSY HRH++  +NK
Sbjct: 220 CSYSHRHETATSNK 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,522,588
Number of Sequences: 5004
Number of extensions: 53457
Number of successful extensions: 157
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)