Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_K24
(601 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18786| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.076
SB_37504| Best HMM Match : PIP5K (HMM E-Value=0) 31 0.94
SB_56163| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_42820| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_34828| Best HMM Match : W2 (HMM E-Value=6.9) 29 3.8
SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_2431| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_25826| Best HMM Match : Ank (HMM E-Value=6.7e-37) 28 6.6
SB_39563| Best HMM Match : Ctr (HMM E-Value=0.39) 28 6.6
SB_53385| Best HMM Match : DUF1388 (HMM E-Value=0.66) 27 8.8
SB_10324| Best HMM Match : IFP_35_N (HMM E-Value=0.1) 27 8.8
>SB_18786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1056
Score = 34.3 bits (75), Expect = 0.076
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Frame = +3
Query: 9 RWPSPTNTNMKTFVILFGLVAVSVAAPQSPTEPIPILKQESNIEPDGSYQYSYETGNG-I 185
+W SP T+ + ++ G+ A + + P+S T P + + P TG G +
Sbjct: 466 QWSSPIGTSHRFKALIKGVNAGASSTPRSITLPNTSVGLVPQVHP---------TGQGFV 516
Query: 186 SAAERGALKNIGAEEPALEVEGQFQYPSEDGGTIQLSYIANENGFQPQGSHLPTPPPI 359
S A +GA+K+ G + + V G GT + Y+ + +PQ SH P PI
Sbjct: 517 SLAAKGAVKSEGGSQSYVAVSGTGSPSIVTTGTGSIQYVI-KPVIKPQ-SHRYLPMPI 572
>SB_37504| Best HMM Match : PIP5K (HMM E-Value=0)
Length = 2119
Score = 30.7 bits (66), Expect = 0.94
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = +3
Query: 162 SYETGNGISAAERGALKNIGAEEPALEVEGQFQYPSEDGGTIQLSYIANENGFQPQGSHL 341
S +TG G+ R + E ++ V+G+ + SED G ++ + + G +P H+
Sbjct: 1833 SKDTGEGVVGTSREPTRPGSKYEESVSVDGKKKEDSEDSGLVEFGF-PRQTGQEPLNFHI 1891
>SB_56163| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3
Query: 231 PALEVEGQFQYPSEDGGTIQLSYIANENGFQPQGSHLPTPPP 356
P ++ F YP +D Y A + PQG+ LP PPP
Sbjct: 110 PPVDQYSAFPYPPQDQQAPP--YPAQNQYWNPQGTSLPPPPP 149
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 29.5 bits (63), Expect = 2.2
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Frame = +3
Query: 120 KQESNIEPDGSYQ---YSYETGNGISAAERGALKNIGAEEPALEVEGQFQYPSEDGGTIQ 290
K++ + E SY+ Y+ ETG+ + E N +EPA + +G F P + Q
Sbjct: 848 KRKRSDEEFDSYESGDYTDETGSSCDSEEYTDTDN---DEPAHKNDGSF--PRRNESPSQ 902
Query: 291 LSYIANENGFQPQGSHLPTPPPIP 362
+ P G +P PPP P
Sbjct: 903 TPGGSESPSASPPGGSVPPPPPPP 926
>SB_42820| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/28 (57%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +3
Query: 342 PTPPPIPEVIQRALAYL-ATAPPQPENN 422
PTPPP PEVI R+ A L A P P N
Sbjct: 172 PTPPP-PEVIYRSCAELKAARPSTPSGN 198
>SB_34828| Best HMM Match : W2 (HMM E-Value=6.9)
Length = 184
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +3
Query: 339 LPTPPPI--PEVIQRALAYLATAPPQPENNRP 428
LPTPPP P+ + L T PP+P RP
Sbjct: 135 LPTPPPPTPPQSTPKPRRVLPTPPPKPPTPRP 166
>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1850
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Frame = +3
Query: 261 YPSEDGGTIQLSYIANENGFQPQGSHLPTPPPIPEVIQR---ALAYLATAPPQP 413
YPS+D Q Y A + G Q S P P P + A AY AP P
Sbjct: 1269 YPSQDAA-YQTGYPAYQQGGQAYPSAAPAPAPAAQAYPSAAPATAYPTQAPANP 1321
>SB_2431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 61
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = +3
Query: 342 PTPPPIPEVIQRALAYLATAPP 407
PTPPP PEVI R+ A L A P
Sbjct: 15 PTPPP-PEVIYRSCAELKAARP 35
>SB_25826| Best HMM Match : Ank (HMM E-Value=6.7e-37)
Length = 1041
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 290 VVLHRQREWLPASGISFTHTTPNP*SHPARSRI 388
+ L R EW A S H T P S P++SR+
Sbjct: 878 ITLDRDIEWYSAFAPSTPHQTSTPSSTPSKSRL 910
>SB_39563| Best HMM Match : Ctr (HMM E-Value=0.39)
Length = 258
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +3
Query: 78 VAAPQSPTEPIPILKQESNIEPDGSYQYSYETGNGISAAERGA 206
++A SPT+P + K E +IEP+ SY S S RGA
Sbjct: 195 LSAEASPTQPT-VRKAEHSIEPNPSYSKSRGKTAQASQHSRGA 236
>SB_53385| Best HMM Match : DUF1388 (HMM E-Value=0.66)
Length = 264
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +3
Query: 321 QPQGSHLPTPPPIPEVIQRAL-AYLATAPPQP-ENNRP 428
+PQ SH P PP P+ R L ++ P +P E++RP
Sbjct: 151 RPQESHRPLEPPRPQEQHRPLESHRPLEPTRPQESHRP 188
>SB_10324| Best HMM Match : IFP_35_N (HMM E-Value=0.1)
Length = 798
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 9 RWPSPTNTNMKTFVILFGLVAVSVAAPQSPTEPIPILKQESNIEPDG 149
++ P N NMKT I+ + + + P P ILK S + P+G
Sbjct: 606 KYTGPKN-NMKTEPIVSPSIPKNTVSTSCPGNPPSILKNSSAVPPNG 651
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,115,155
Number of Sequences: 59808
Number of extensions: 423581
Number of successful extensions: 1123
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -