Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_K24
         (601 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80845-1|AAK39181.1| 1217|Caenorhabditis elegans Prion-like-(q/n...    33   0.16 
Z81106-2|CAB03220.2|  468|Caenorhabditis elegans Hypothetical pr...    31   0.83 
Z77662-14|CAI79239.1|  245|Caenorhabditis elegans Hypothetical p...    31   0.83 
Z93387-4|CAI91177.1|  333|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z93387-3|CAB07652.1|  352|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical pr...    28   4.4  
AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical...    28   4.4  
AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein p...    28   4.4  
Z78418-2|CAB01695.1|  817|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U39652-5|AAV28338.1|  986|Caenorhabditis elegans Hypothetical pr...    27   7.7  
U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AL132860-5|CAB60515.1|  798|Caenorhabditis elegans Hypothetical ...    27   7.7  
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    27   7.7  

>U80845-1|AAK39181.1| 1217|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 15
           protein.
          Length = 1217

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +3

Query: 258 QYPSEDGGTIQLSYIANENGFQPQGSHLPTPPPIPEVIQRALAYLATAPPQ 410
           Q   + GG   ++  +++ G QPQG  +  PP  P  IQ+  + + T P Q
Sbjct: 640 QQMHQQGGPQLMNRPSSQMGVQPQGGMMSRPPSQPHYIQQGPSSMNTPPQQ 690


>Z81106-2|CAB03220.2|  468|Caenorhabditis elegans Hypothetical
           protein R06C1.3 protein.
          Length = 468

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 19/52 (36%), Positives = 22/52 (42%)
 Frame = +3

Query: 258 QYPSEDGGTIQLSYIANENGFQPQGSHLPTPPPIPEVIQRALAYLATAPPQP 413
           Q P+E   TIQ       +   P     P PPP P VI  A A  A   P+P
Sbjct: 335 QLPAEAPSTIQF---VEPSAAPPTNIPPPPPPPPPMVISSAAASFAAPAPKP 383


>Z77662-14|CAI79239.1|  245|Caenorhabditis elegans Hypothetical
           protein F47B8.13 protein.
          Length = 245

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 35/116 (30%), Positives = 45/116 (38%), Gaps = 5/116 (4%)
 Frame = +3

Query: 81  AAPQSPTEPIPILKQESNIEPDGS--YQYSYETGNGISAAERGALKNIGAEEPALEVEGQ 254
           AAP +P EP+P    E    P  +   + +       + A  GA  + GA  PA    G 
Sbjct: 101 AAPTAPAEPVPAPAPEPEAAPAPAPVAEPALAPSPDAAPAADGASYSAGAAAPA----GG 156

Query: 255 FQYPSEDGGTIQLSYIANENGFQPQGSHLPTPPPIPEVIQRALAYLA--TAP-PQP 413
             YP++    +   Y   E G  P     P P P P       A LA  TAP P P
Sbjct: 157 ASYPAKK-RRVARDYA--EGGAAPAAPAEPAPEPAPAPAPAPEAALAPETAPAPAP 209


>Z93387-4|CAI91177.1|  333|Caenorhabditis elegans Hypothetical
           protein T02E9.2b protein.
          Length = 333

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
 Frame = +3

Query: 258 QYPSEDG-GTIQLSYIANENGFQPQGSHLPTPPPI----PEVIQRALAYLATAPPQP 413
           QYP + G G  Q  + A    +QPQG +   P P+    P+    A  Y A   P P
Sbjct: 67  QYPQQGGYGGAQQGFQAAPAPYQPQGGYQAGPAPVQGYQPQAQVPAGGYQAPVQPAP 123


>Z93387-3|CAB07652.1|  352|Caenorhabditis elegans Hypothetical
           protein T02E9.2a protein.
          Length = 352

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
 Frame = +3

Query: 258 QYPSEDG-GTIQLSYIANENGFQPQGSHLPTPPPI----PEVIQRALAYLATAPPQP 413
           QYP + G G  Q  + A    +QPQG +   P P+    P+    A  Y A   P P
Sbjct: 67  QYPQQGGYGGAQQGFQAAPAPYQPQGGYQAGPAPVQGYQPQAQVPAGGYQAPVQPAP 123


>Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical protein
            F52G2.2a protein.
          Length = 1319

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
 Frame = +3

Query: 141  PDGSYQYSYETGNGISAAERGALKNIGAEE----PALEVEGQFQYPSEDGGTIQLSYIAN 308
            P GSYQ S++  +  SAA  G  ++          ++  +  +Q P     + Q SY   
Sbjct: 1168 PVGSYQSSHQNFDNRSAAHNGDGRSTSQSHHSAGGSMNHQNFYQPPVYQSSSSQQSYQPR 1227

Query: 309  ENGFQPQGSHLPTPPP 356
             NG  P G   P PPP
Sbjct: 1228 YNG-APSG---PLPPP 1239


>Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical protein
            F52G2.2b protein.
          Length = 1129

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
 Frame = +3

Query: 141  PDGSYQYSYETGNGISAAERGALKNIGAEE----PALEVEGQFQYPSEDGGTIQLSYIAN 308
            P GSYQ S++  +  SAA  G  ++          ++  +  +Q P     + Q SY   
Sbjct: 978  PVGSYQSSHQNFDNRSAAHNGDGRSTSQSHHSAGGSMNHQNFYQPPVYQSSSSQQSYQPR 1037

Query: 309  ENGFQPQGSHLPTPPP 356
             NG  P G   P PPP
Sbjct: 1038 YNG-APSG---PLPPP 1049


>AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical
           protein Y116A8C.32 protein.
          Length = 699

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 330 GSHLPTPPPIPEVIQRALAYLATAPPQP 413
           G  +P PPP P +     + LA APP P
Sbjct: 670 GGFMPPPPPPPPMPGDLSSLLAAAPPPP 697


>AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein
           protein.
          Length = 699

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 330 GSHLPTPPPIPEVIQRALAYLATAPPQP 413
           G  +P PPP P +     + LA APP P
Sbjct: 670 GGFMPPPPPPPPMPGDLSSLLAAAPPPP 697


>Z78418-2|CAB01695.1|  817|Caenorhabditis elegans Hypothetical
           protein F25D7.3 protein.
          Length = 817

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +3

Query: 306 NENGFQPQGSHLPTPPPIPEVIQ 374
           N  G   QGSHL  PPP P+  Q
Sbjct: 737 NTMGHMGQGSHLQGPPPPPQHFQ 759


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
 Frame = +3

Query: 111  PILKQESNI-EPDGSYQYSYETGNGISA---AERGALKNIGAEEPALEVEGQFQYPSEDG 278
            P++   S + E  GS+ Y    G   SA   AE  A + +G+E     V+ QF +     
Sbjct: 1078 PVVSSISQLLEEAGSFSYVEGHGTATSAGDSAESMAYQKLGSELIMSSVKAQFGHCEVAS 1137

Query: 279  GTIQLSYIAN--ENGFQPQGSH 338
            G IQL  +++  ++G  P   H
Sbjct: 1138 GLIQLMKVSSIGKHGIIPSIVH 1159


>U39652-5|AAV28338.1|  986|Caenorhabditis elegans Hypothetical
           protein R07E4.1b protein.
          Length = 986

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = +1

Query: 409 NLKTTGHKYSVSLFKKKRANSVILVEFEMPIYFLTYLSNFRYSF 540
           ++ T   K +  +  K++ NSV +  F+M I+FLTY ++F  S+
Sbjct: 622 SVPTGSSKTTEYMESKRQCNSVPIPVFDM-IHFLTYQTSFLTSY 664


>U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical
           protein R07E4.1a protein.
          Length = 1122

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = +1

Query: 409 NLKTTGHKYSVSLFKKKRANSVILVEFEMPIYFLTYLSNFRYSF 540
           ++ T   K +  +  K++ NSV +  F+M I+FLTY ++F  S+
Sbjct: 758 SVPTGSSKTTEYMESKRQCNSVPIPVFDM-IHFLTYQTSFLTSY 800


>AL132860-5|CAB60515.1|  798|Caenorhabditis elegans Hypothetical
           protein Y56A3A.6 protein.
          Length = 798

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = +3

Query: 264 PSEDGGTIQLSYIANE---NGFQPQGSHLPTPPPIPEVIQRALAYLATAPPQPEN 419
           P+E  G I L  +      +G +P  +  P PPP P         LA APPQP+N
Sbjct: 728 PAEKSG-ISLGKVVESVEASGNRPSSTPPPPPPPPP---------LAAAPPQPKN 772


>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
           protein Y8A9A.2 protein.
          Length = 1360

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 132 CSPASGSGWVQWVIGVQLPT 73
           C PA+G  W +W  G   PT
Sbjct: 902 CCPAAGGYWSEWTTGGSCPT 921


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,128,857
Number of Sequences: 27780
Number of extensions: 317670
Number of successful extensions: 1169
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)