Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_K24
(601 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02600.2 68418.m00195 heavy-metal-associated domain-containin... 31 0.44
At5g02600.1 68418.m00196 heavy-metal-associated domain-containin... 31 0.44
At5g65630.1 68418.m08256 DNA-binding bromodomain-containing prot... 29 2.4
At4g16144.1 68417.m02448 expressed protein 29 3.1
At3g54220.1 68416.m05993 scarecrow transcription factor, putativ... 29 3.1
At5g16140.1 68418.m01885 peptidyl-tRNA hydrolase family protein ... 28 4.1
At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99... 28 4.1
At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99... 28 4.1
At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99... 28 4.1
At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99... 28 4.1
At5g58010.1 68418.m07258 basic helix-loop-helix (bHLH) family pr... 28 5.4
At3g01650.1 68416.m00096 copine-related low similarity to SP|Q99... 28 5.4
At1g24290.1 68414.m03065 AAA-type ATPase family protein similar ... 28 5.4
At5g48390.1 68418.m05983 tetratricopeptide repeat (TPR)-containi... 27 7.2
At2g11620.1 68415.m01249 hypothetical protein 27 7.2
At1g54170.1 68414.m06175 ataxin-2-related similar to SCA2 (GI:17... 27 7.2
At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family... 27 9.5
At3g45410.1 68416.m04902 lectin protein kinase family protein co... 27 9.5
At3g09770.2 68416.m01158 zinc finger (C3HC4-type RING finger) fa... 27 9.5
At3g09770.1 68416.m01157 zinc finger (C3HC4-type RING finger) fa... 27 9.5
At2g16920.1 68415.m01949 ubiquitin-conjugating enzyme family pro... 27 9.5
At1g66880.1 68414.m07601 serine/threonine protein kinase family ... 27 9.5
At1g61080.1 68414.m06877 proline-rich family protein 27 9.5
At1g11070.1 68414.m01268 hydroxyproline-rich glycoprotein family... 27 9.5
>At5g02600.2 68418.m00195 heavy-metal-associated domain-containing
protein low similarity to gi:3168840 copper homeostasis
factor; contains Pfam heavy-metal-associated domain
PF00403; predicted proteins, Arabidopsis thaliana
Length = 319
Score = 31.5 bits (68), Expect = 0.44
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = +3
Query: 228 EPALEVEGQFQYPSEDGGTIQLSYIANENGFQPQGSHLPTPPPIPEVIQRALAYLATAPP 407
EP L + F P++ T LS + +++ P P PPP P Q ++ P
Sbjct: 187 EPVLSPDNPFSEPTKASPTASLSSLEDKDVSSPDFKFSPPPPPPPSPPQ------SSPPS 240
Query: 408 QPENN 422
PE N
Sbjct: 241 PPEKN 245
>At5g02600.1 68418.m00196 heavy-metal-associated domain-containing
protein low similarity to gi:3168840 copper homeostasis
factor; contains Pfam heavy-metal-associated domain
PF00403; predicted proteins, Arabidopsis thaliana
Length = 319
Score = 31.5 bits (68), Expect = 0.44
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = +3
Query: 228 EPALEVEGQFQYPSEDGGTIQLSYIANENGFQPQGSHLPTPPPIPEVIQRALAYLATAPP 407
EP L + F P++ T LS + +++ P P PPP P Q ++ P
Sbjct: 187 EPVLSPDNPFSEPTKASPTASLSSLEDKDVSSPDFKFSPPPPPPPSPPQ------SSPPS 240
Query: 408 QPENN 422
PE N
Sbjct: 241 PPEKN 245
>At5g65630.1 68418.m08256 DNA-binding bromodomain-containing protein
similar to 5.9 kb fsh membrane protein [Drosophila
melanogaster] GI:157455; contains Pfam profile PF00439:
Bromodomain
Length = 590
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +3
Query: 321 QPQGSHLPTPPPIPEVIQRALAYLATAPPQPE 416
+P P+PPP P VIQ L PPQ E
Sbjct: 340 EPSRVQSPSPPPPPPVIQPELPQPQPPPPQLE 371
>At4g16144.1 68417.m02448 expressed protein
Length = 390
Score = 28.7 bits (61), Expect = 3.1
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Frame = +3
Query: 186 SAAERGALKNIGAEEPALEVE-GQFQYPSEDGGTIQLSYIANENGFQPQGSHLPTPPPIP 362
SA+ G + + L ++ G++Q SE + Q A E+ FQ G P+PPP+
Sbjct: 236 SASLNGDSQEVSTLNSVLSLDDGRWQRHSEAVNS-QFISDATEDPFQFVGMKQPSPPPVL 294
Query: 363 EVIQRALAYLA---TAPPQP 413
+ + LA + A P+P
Sbjct: 295 AQVHQELAQICPSKVADPRP 314
>At3g54220.1 68416.m05993 scarecrow transcription factor, putative
nearly identical to SCARECROW [Arabidopsis thaliana]
GI:1497987
Length = 653
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = +3
Query: 321 QPQGSHLPTPPPIPEVIQRALAYLATAPPQPE 416
Q Q H P PPPI + Q APPQPE
Sbjct: 225 QQQQQHKPPPPPIQQ--QERENSSTDAPPQPE 254
>At5g16140.1 68418.m01885 peptidyl-tRNA hydrolase family protein
contains Pfam profile PF01195: peptidyl-tRNA hydrolase
Length = 240
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 183 YHFQSHKSIGRTHQARCCSPASG 115
YHFQ+ K + R + R CS SG
Sbjct: 11 YHFQTQKPVFRKQRFRVCSSTSG 33
>At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 225 EEPALEVEGQFQYPSEDGGTIQLSYIANENGFQPQGSHLPTPPPI 359
+E + + P + TI+L+ + NG+ P+ P PPP+
Sbjct: 333 KETEFALSALMEIPQQYKATIELNLLGRRNGYIPE--RFPLPPPM 375
>At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 225 EEPALEVEGQFQYPSEDGGTIQLSYIANENGFQPQGSHLPTPPPI 359
+E + + P + TI+L+ + NG+ P+ P PPP+
Sbjct: 333 KETEFALSALMEIPQQYKATIELNLLGRRNGYIPE--RFPLPPPM 375
>At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 225 EEPALEVEGQFQYPSEDGGTIQLSYIANENGFQPQGSHLPTPPPI 359
+E + + P + TI+L+ + NG+ P+ P PPP+
Sbjct: 333 KETEFALSALMEIPQQYKATIELNLLGRRNGYIPE--RFPLPPPM 375
>At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 225 EEPALEVEGQFQYPSEDGGTIQLSYIANENGFQPQGSHLPTPPPI 359
+E + + P + TI+L+ + NG+ P+ P PPP+
Sbjct: 333 KETEFALSALMEIPQQYKATIELNLLGRRNGYIPE--RFPLPPPM 375
>At5g58010.1 68418.m07258 basic helix-loop-helix (bHLH) family
protein bHLH transcription factor GBOF-1, Tulipa
gesneriana, EMBL:AF185269; contains Pfam profile
PF00010: Helix-loop-helix DNA-binding domain
Length = 297
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 252 QFQYPSEDGGTIQLSYIANENGFQPQGSHLPTPPPI 359
QF +P E GG + ++ G QPQG+ T P+
Sbjct: 61 QFHHPQESGGPT----MGSQEGLQPQGTVSTTSAPV 92
>At3g01650.1 68416.m00096 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 489
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +3
Query: 210 KNIGAEEPALEVEGQFQYPSEDGGTIQLSYIANENGFQPQGSHLPTPPPI 359
K+ +E + + P + TI+L+ + NG PQ +P PPP+
Sbjct: 362 KDQSRKETEFALSALMEIPPQYKATIELNLLGVRNGNIPQ--RIPLPPPV 409
>At1g24290.1 68414.m03065 AAA-type ATPase family protein similar to
Werner helicase interacting protein [Homo sapiens]
GI:14349166; contains Pfam profiles PF00004: ATPase
family associated with various cellular activities
(AAA), PF00627: UBA/TS-N domain; contains
ATP/GTP-binding site motif A (P-loop)
Length = 525
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/62 (30%), Positives = 25/62 (40%)
Frame = +3
Query: 219 GAEEPALEVEGQFQYPSEDGGTIQLSYIANENGFQPQGSHLPTPPPIPEVIQRALAYLAT 398
G EEP ++ SED G S + Q SH P ++ + AYLA
Sbjct: 375 GGEEPLYIARRLIRFASEDIGLADPSALTQAVACY-QASHFLGMPECNVILAQCTAYLAL 433
Query: 399 AP 404
AP
Sbjct: 434 AP 435
>At5g48390.1 68418.m05983 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 900
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -3
Query: 482 TRITELALFFLNKLTEYLWPVVFRLWGSGGEVCESA 375
TR+++LA F N +W + FRLW + ++ +A
Sbjct: 59 TRLSQLAPFPDNSFKLTIWKLSFRLWNACVDLANAA 94
>At2g11620.1 68415.m01249 hypothetical protein
Length = 491
Score = 27.5 bits (58), Expect = 7.2
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Frame = +3
Query: 78 VAAPQSPTEPIPILKQE--SNIEPDGSYQYSYETGNGISAAERGALKNIGAEEPALEVEG 251
+ P P +P+ L E N+ + YE N +G L E+P ++ G
Sbjct: 396 LGVPTQPEKPLQDLYGECQQNLSVEDLLPLEYEANNN---GLQGGLTQ--PEKPLQDLYG 450
Query: 252 QFQYPSEDGGTIQLSYIANENGFQ 323
+ Q+ + L Y AN NG Q
Sbjct: 451 ECQHNLSIEDLLPLEYEANNNGLQ 474
>At1g54170.1 68414.m06175 ataxin-2-related similar to SCA2
(GI:1770390) [Homo sapiens]; similar to ataxin-2
(GI:3005020) [Mus musculus]
Length = 587
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +3
Query: 258 QYPSEDGGTIQLSYIANENGFQPQGSHLPTPPPIPEVIQRALAYLATAPPQPE 416
Q+P T QLS N+ + P P P + + QR + ++ P QPE
Sbjct: 530 QHPMMYNNTTQLS--PNQTYYSPNSPQYPQPMMVTQ--QRPILFMPPTPYQPE 578
>At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 162
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/65 (29%), Positives = 26/65 (40%)
Frame = +3
Query: 231 PALEVEGQFQYPSEDGGTIQLSYIANENGFQPQGSHLPTPPPIPEVIQRALAYLATAPPQ 410
P + G +YP GG Q Y P + PTPPP ++ Y T PP
Sbjct: 84 PPSQSGGGSKYPPPYGGGGQGYYYP-----PPYSGNYPTPPPPNPIVPYFPFYYHTPPPG 138
Query: 411 PENNR 425
++R
Sbjct: 139 SGSDR 143
>At3g45410.1 68416.m04902 lectin protein kinase family protein
contains Pfam profiles: PF00069 protein kinase domain,
PF00138 legume lectins alpha domain, PF00139 legume
lectins beta domain
Length = 664
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 30 TNMKTFVILFGLVAVSVAAPQSPTEP-IPILKQ 125
T+MKT V FG + V + P EP +P+ KQ
Sbjct: 518 TSMKTDVYAFGAFLLEVICGRRPVEPELPVGKQ 550
>At3g09770.2 68416.m01158 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 341
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +3
Query: 324 PQGSHLPTPPPIPEVIQRALAYLATAPPQPENN 422
P S LP PPP+P IQ A P P N
Sbjct: 29 PPSSSLP-PPPLPTEIQANPIVFAAVTPYPNPN 60
>At3g09770.1 68416.m01157 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 388
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +3
Query: 324 PQGSHLPTPPPIPEVIQRALAYLATAPPQPENN 422
P S LP PPP+P IQ A P P N
Sbjct: 29 PPSSSLP-PPPLPTEIQANPIVFAAVTPYPNPN 60
>At2g16920.1 68415.m01949 ubiquitin-conjugating enzyme family
protein low similarity to ubiquitin-conjugating
BIR-domain enzyme APOLLON [Homo sapiens] GI:8489831,
ubiquitin-conjugating enzyme [Mus musculus] GI:3319990;
contains Pfam profile PF00179: Ubiquitin-conjugating
enzyme
Length = 1102
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = -1
Query: 151 DPSGSMLLSCFRIGMGSVGDW---GAATDTATSP--KRITKVFMF 32
+PS LLSCF VGDW + +AT P K ++K+ ++
Sbjct: 317 NPSNLTLLSCFTHANWQVGDWCLLPSLNQSATIPLHKHVSKLRLY 361
>At1g66880.1 68414.m07601 serine/threonine protein kinase family
protein contains protein kinase domain, Pfam:PF00069;
contains serine/threonine protein kinase domain,
INTERPRO:IPR002290
Length = 1296
Score = 27.1 bits (57), Expect = 9.5
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +2
Query: 77 GSCTPITH*THPDPEAGEQHR 139
G C+P+ T P P+ G++H+
Sbjct: 213 GKCSPLNPTTQPPPQPGDRHK 233
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 339 LPTPPPIPEVIQRALAYLATAPPQP 413
LP+PPP P + A++ PP P
Sbjct: 437 LPSPPPTPPIADIAISMPPPPPPPP 461
>At1g11070.1 68414.m01268 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 554
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 324 PQGSHLPTPPPIPEVIQRALAYLATAPP 407
P + LP PPP+P +++ +A PP
Sbjct: 227 PGRAALPPPPPLPMAVRKGVAAPPLPPP 254
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,524,127
Number of Sequences: 28952
Number of extensions: 306436
Number of successful extensions: 988
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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