Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_K22
         (823 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12968| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.21 
SB_17894| Best HMM Match : UPF0005 (HMM E-Value=0.00021)               31   0.85 
SB_3787| Best HMM Match : Pentapeptide_2 (HMM E-Value=3)               30   2.6  
SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0)                29   4.6  
SB_49176| Best HMM Match : Suf (HMM E-Value=0.6)                       28   8.0  
SB_23388| Best HMM Match : ParBc (HMM E-Value=0.3)                     28   8.0  

>SB_12968| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 104

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +1

Query: 499 PSIIITALLGTTLVFVCFSAAAMLAERGS 585
           P I++TA   T ++F CF+ +A+ AE+ S
Sbjct: 70  PLIVVTAFFATVMIFACFTVSALWAEQRS 98


>SB_17894| Best HMM Match : UPF0005 (HMM E-Value=0.00021)
          Length = 344

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
 Frame = +1

Query: 463 MGPLLEYVSVVDPSIIITALLGTTLVFVCFSAAAMLAERGSWXXXXXXXXXXXXSMSLMT 642
           +G +L  + ++   +++ A + T  V    S  A  A  G +             + + +
Sbjct: 199 VGTILAPIMLLGGPLVVRAAVVTAGVVGALSLTAACAPDGKFLTWGGPLAIGLGGVVMAS 258

Query: 643 LVNLFMQSHFLYQAHL-----YLGLMLMCGFVLFDTQLIIEK 753
           L +LF+ +     A L     Y GL++  GF+L+DTQ II +
Sbjct: 259 LGSLFLPATTAVGAGLQAITTYGGLVIFGGFLLYDTQKIIRQ 300


>SB_3787| Best HMM Match : Pentapeptide_2 (HMM E-Value=3)
          Length = 324

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 573 SKHSSSREAYKYQGSAEQSSYYDRWVNYTDIFKQGTHAH 457
           S + S R +    GSA+ SS  D +V+Y +I+  G   H
Sbjct: 266 SSNGSKRSSNSSTGSAKHSSDSDDYVDYQEIYGDGQEKH 304


>SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0)
          Length = 1086

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/52 (23%), Positives = 28/52 (53%)
 Frame = +3

Query: 579  RQLAIPRWHIDDTVHIYVTNDFG*SVYAVTFLVPSSSLSWPHAHVRFCTVRH 734
            R   I +W  D  +H  +T ++  +++ +  L+P++ L   ++ + +  VRH
Sbjct: 893  RTYCIYQWSEDQQLHFQITRNYYLALFCILALLPAALLVVLYSAICYTLVRH 944


>SB_49176| Best HMM Match : Suf (HMM E-Value=0.6)
          Length = 594

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
 Frame = +1

Query: 139 NHCLKTLQKVKKNMNTINFQTFVNSFQN-----RLEPPVRQHLKNVYAT 270
           N  LK L +V++N+N +  Q+   +F +     R  PP   HLK +Y T
Sbjct: 319 NIVLKPLPRVEENVN-VQTQSLDYAFDDKEGILRYRPPKHDHLKEMYVT 366


>SB_23388| Best HMM Match : ParBc (HMM E-Value=0.3)
          Length = 1168

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +1

Query: 148  LKTLQKVKKNMNTIN-FQTFVNSFQNRLEPPVRQHLKNVYATLMMT-CVSASAGVYV 312
            LK L + +KN  T + F   V   Q R   PVR+H   + + L+MT  +S   GV V
Sbjct: 982  LKKLYEAEKNTKTTDEFAKVVQDRQQRRN-PVREHCLRLISLLLMTRALSLLLGVLV 1037


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,371,590
Number of Sequences: 59808
Number of extensions: 512164
Number of successful extensions: 1088
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2299585728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)