Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_K20
(765 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1194 - 24708281-24708796,24708990-24708996,24709199-24709866 125 3e-29
03_04_0070 + 17042509-17043129 112 3e-25
03_04_0073 + 17059358-17059921 42 4e-04
01_05_0102 - 18131640-18131655,18132928-18133046,18133186-181333... 34 0.11
01_06_1476 + 37640278-37642551 31 1.0
12_02_0523 + 19988949-19989234,19992420-19992484,19992570-199926... 30 1.8
07_03_0669 - 20542481-20542489,20543212-20543872,20543899-205439... 30 1.8
12_01_0231 + 1744323-1745276,1745516-1746193 30 2.3
11_01_0234 + 1804581-1805357,1805941-1806447 30 2.3
07_01_0422 + 3220988-3221536 30 2.3
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 30 2.3
03_04_0072 + 17054137-17054499 29 3.1
11_01_0233 + 1801011-1802081 29 4.1
12_01_1115 - 11904334-11904500,11905196-11905196,11905356-119055... 28 7.1
06_03_0677 - 23440273-23440749,23440824-23440985,23442007-23442627 28 9.4
>07_03_1194 - 24708281-24708796,24708990-24708996,24709199-24709866
Length = 396
Score = 125 bits (302), Expect = 3e-29
Identities = 66/151 (43%), Positives = 87/151 (57%)
Frame = +2
Query: 275 EYTREPCPWRILDDSXXXXXXXXXXXXLFHSIKGFRNAPLGFSRKMLGSLAAVKERSPIV 454
E +REPCP RILDD LFH +KG N+P G +++G AV+ +P V
Sbjct: 5 ETSREPCPDRILDDVGGAFGMGAVGGSLFHFLKGTYNSPNG--ERLVGGAQAVRMNAPRV 62
Query: 455 GGNFAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGVPAMAGSAXXXXXX 634
GG+FAVWGG+FS DC++V+MRQKEDPWNSI++GA TGG L+ R G A SA
Sbjct: 63 GGSFAVWGGLFSAFDCTMVFMRQKEDPWNSIIAGAATGGFLSMRQGPGAAGRSALMGGML 122
Query: 635 XXXXXXXXXMFTRLTAEQFKPQQPIFEDPSI 727
M R+ A P P+ +DP++
Sbjct: 123 LALIEGAGLMLNRVLAT--PPPLPV-DDPNL 150
Score = 113 bits (273), Expect = 1e-25
Identities = 55/108 (50%), Positives = 70/108 (64%)
Frame = +2
Query: 284 REPCPWRILDDSXXXXXXXXXXXXLFHSIKGFRNAPLGFSRKMLGSLAAVKERSPIVGGN 463
R+PCP RILDD FH +KG RN+P G + G + V+ +P V G
Sbjct: 232 RDPCPDRILDDIGASFGMGAVGGSFFHFVKGLRNSPSG--ARFAGGMEGVRMNAPRVAGG 289
Query: 464 FAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGVPAMA 607
FAVW G+FS DC+LV +RQKEDP+NSI++GA TGGILAAR G+ A+A
Sbjct: 290 FAVWCGLFSACDCALVSVRQKEDPYNSIIAGAATGGILAARQGLRAVA 337
>03_04_0070 + 17042509-17043129
Length = 206
Score = 112 bits (269), Expect = 3e-25
Identities = 54/111 (48%), Positives = 68/111 (61%)
Frame = +2
Query: 284 REPCPWRILDDSXXXXXXXXXXXXLFHSIKGFRNAPLGFSRKMLGSLAAVKERSPIVGGN 463
REPCP RILDD FH ++G N+P G ++ G AV+ P GGN
Sbjct: 6 REPCPDRILDDVGGAFAMGAVGGTAFHFLRGAYNSPNG--HRLSGGSQAVRMSVPRTGGN 63
Query: 464 FAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGVPAMAGSA 616
FA WGG+FS DC++V+ RQKEDPWNSI++GA TG +L+ R G A A SA
Sbjct: 64 FAAWGGLFSAFDCAMVHARQKEDPWNSILAGAATGAVLSLRQGPRATATSA 114
>03_04_0073 + 17059358-17059921
Length = 187
Score = 42.3 bits (95), Expect = 4e-04
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Frame = +2
Query: 269 MDEYTREPCPWRILDDSXXXXXXXXXXXXLFHSIKGFRNAPLGFSRKMLGSLAAVKERSP 448
M+E P P +LD++ L H G R+ P G R + G+ AV++ +P
Sbjct: 1 MEEEWGVPYPDCVLDNAGAGFVGGAAAGTLAHLFTGLRDFPCG--RHLAGAAQAVRDGAP 58
Query: 449 IVGGNFAVWGGMFSTIDCSLVYMRQK-EDPWNSIMSGALTGGILAARNGVPAMAGSA 616
+ +A ++S +L + +DP S+ +GA TG + R+G P G A
Sbjct: 59 CLATRWAARLAVYSAACHALSSATDRHDDPLVSVAAGAATGAVARLRHG-PLAVGRA 114
>01_05_0102 -
18131640-18131655,18132928-18133046,18133186-18133300,
18134072-18134325
Length = 167
Score = 34.3 bits (75), Expect = 0.11
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -3
Query: 223 FSHYKTSKYTLHCLETPSGLKFVMNTDNQAQGVRDLLMFFHTXF 92
F +KT+ Y L+ LE+PSG+K ++ T + RD L + +
Sbjct: 103 FYSFKTNTYKLNFLESPSGIKLILITHPRTGDQRDTLKHIYNLY 146
>01_06_1476 + 37640278-37642551
Length = 757
Score = 31.1 bits (67), Expect = 1.0
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 586 SCSQDTPREGSTHNGIPWI 530
S D PR G+ HNGIPW+
Sbjct: 320 SAGNDGPRLGTLHNGIPWL 338
>12_02_0523 +
19988949-19989234,19992420-19992484,19992570-19992642,
19992765-19992818,19993532-19993761
Length = 235
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +2
Query: 464 FAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTG 568
FAV G+ S + C+L +R K+D N+ ++G TG
Sbjct: 119 FAVLAGVQSLVACTLRQLRGKDDVLNAGIAGCCTG 153
>07_03_0669 -
20542481-20542489,20543212-20543872,20543899-20543983,
20545311-20546625
Length = 689
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/19 (63%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Frame = -1
Query: 573 IPPVRA-PLIMEFHGSSFC 520
IPPVR P+++ FHG SFC
Sbjct: 463 IPPVRRLPIVVYFHGGSFC 481
>12_01_0231 + 1744323-1745276,1745516-1746193
Length = 543
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 588 FLAARIPPVRAPLIMEFHGSSFCLMYTS 505
+L P R P+++ FHG FCL + +
Sbjct: 83 YLTTTTPAGRRPVLVHFHGGGFCLSHAA 110
>11_01_0234 + 1804581-1805357,1805941-1806447
Length = 427
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 588 FLAARIPPVRAPLIMEFHGSSFCLMYTS 505
+L P R P+++ FHG FCL + +
Sbjct: 83 YLTTTAPARRRPVLVHFHGGGFCLSHAA 110
>07_01_0422 + 3220988-3221536
Length = 182
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +2
Query: 365 SIKGFRNAPLGFSRKMLGSLAAVKERSPIVGGNFAVWGGMFSTIDCSLVYMRQKEDPW 538
+++ F G +RK G AA + P+ N+ + + DC ++ R+ DPW
Sbjct: 90 TLEAFPEVVYGEARKARGGAAATQTCCPVCLENYGDGDVLRALPDCGHLFHRECVDPW 147
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = -1
Query: 612 LPAIAGTPFLAARIPPVRAPLIMEFHGSSFCLMYTSEQSMVENIPPQTAKLPPT 451
LP+++G P + +PP+ P+ M+ GSS +M Q ++ QT + PP+
Sbjct: 571 LPSMSGPPPVNPPLPPMPHPMAMQVQGSSNQMMPQMPQHLIG--MNQTHQGPPS 622
>03_04_0072 + 17054137-17054499
Length = 120
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 524 KEDPWNSIMSGALTGGILAARNG 592
KE+ WN + +GA T G L R G
Sbjct: 8 KEESWNFVFAGAATSGFLRLRQG 30
>11_01_0233 + 1801011-1802081
Length = 356
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/44 (38%), Positives = 19/44 (43%)
Frame = -1
Query: 591 PFLAARIPPVRAPLIMEFHGSSFCLMYTSEQSMVENIPPQTAKL 460
P AA P R PL++ HG FCL S P AKL
Sbjct: 78 PPAAAPRPRRRRPLLLHLHGGGFCLSRPSWALYHNFYAPLAAKL 121
>12_01_1115 -
11904334-11904500,11905196-11905196,11905356-11905508,
11905559-11905969
Length = 243
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 530 DPWNSIMSGALTGGILAARNGVPAMAGSA 616
DPW + G+ +GG+ R G PA A SA
Sbjct: 94 DPWPATTGGSRSGGVHCGR-GFPATAASA 121
>06_03_0677 - 23440273-23440749,23440824-23440985,23442007-23442627
Length = 419
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 511 VHEAKGRSMEFHYEWSPHGG 570
+HE KG S+ H SPHGG
Sbjct: 35 LHEDKGFSLSLHGSASPHGG 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,968,046
Number of Sequences: 37544
Number of extensions: 463732
Number of successful extensions: 1012
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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