Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_K20
         (765 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40700| Best HMM Match : Tim17 (HMM E-Value=6.8005e-42)              93   3e-19
SB_5271| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.58 
SB_28405| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_40700| Best HMM Match : Tim17 (HMM E-Value=6.8005e-42)
          Length = 289

 Score = 92.7 bits (220), Expect = 3e-19
 Identities = 44/79 (55%), Positives = 50/79 (63%)
 Frame = +2

Query: 461 NFAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGVPAMAGSAXXXXXXXX 640
           NFAVWGG+FST DC L+ +R KEDPWNSI SGA+TG +LAAR G  A   SA        
Sbjct: 171 NFAVWGGLFSTFDCCLMGLRGKEDPWNSIGSGAITGAVLAARGGPSAAMRSAAIGAVLLA 230

Query: 641 XXXXXXXMFTRLTAEQFKP 697
                    TR+TAEQFKP
Sbjct: 231 LIEGVGICITRMTAEQFKP 249



 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 19/44 (43%), Positives = 27/44 (61%)
 Frame = +2

Query: 263 YIMDEYTREPCPWRILDDSXXXXXXXXXXXXLFHSIKGFRNAPL 394
           Y M+EY REPCP+RI+DD             +F  +KG+RN+P+
Sbjct: 20  YKMEEYAREPCPYRIVDDCGGAFAMGAIGGGIFSLVKGWRNSPV 63


>SB_5271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 216

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -3

Query: 226 GFSHYKTSKYTLHCLETPSGLKFVMNTDNQAQGVRDLL 113
           G    +   + LHC ++ +GLKF++ TD +  G+  LL
Sbjct: 126 GIEVLEADSFKLHCFQSMTGLKFIVLTDPRQVGMDGLL 163


>SB_28405| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 440 APLLQPNCQAFF-Y*SLVVRF*NLLSNEIVHHR 345
           +P  Q N + FF Y S + RF N+  NE+ H+R
Sbjct: 56  SPWYQANGKCFFLYFSGISRFSNIRENEVTHNR 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,191,204
Number of Sequences: 59808
Number of extensions: 541667
Number of successful extensions: 1232
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1232
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)