Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_K20
(765 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g37410.2 68415.m04588 mitochondrial import inner membrane tra... 128 4e-30
At2g37410.1 68415.m04587 mitochondrial import inner membrane tra... 128 4e-30
At1g20350.1 68414.m02539 mitochondrial import inner membrane tra... 121 5e-28
At5g11690.1 68418.m01366 mitochondrial import inner membrane tra... 90 2e-18
At3g10110.1 68416.m01211 mitochondrial import inner membrane tra... 40 0.001
At1g18320.1 68414.m02289 mitochondrial import inner membrane tra... 40 0.001
At1g17530.1 68414.m02155 mitochondrial import inner membrane tra... 37 0.013
At1g51160.1 68414.m05752 synbindin, putative similar to Swiss-Pr... 35 0.068
At5g51150.1 68418.m06342 expressed protein similar to unknown pr... 34 0.12
At1g12250.1 68414.m01417 thylakoid lumenal protein-related weak ... 31 0.84
At5g16080.1 68418.m01879 expressed protein similar to PrMC3 [Pin... 30 1.9
At5g55510.1 68418.m06914 mitochondrial import inner membrane tra... 29 2.6
At3g56030.1 68416.m06225 pentatricopeptide (PPR) repeat-containi... 29 2.6
At4g26670.1 68417.m03842 mitochondrial import inner membrane tra... 28 5.9
At3g17850.1 68416.m02275 protein kinase, putative similar to IRE... 28 5.9
At3g12070.2 68416.m01503 geranylgeranyl transferase type II beta... 28 5.9
At3g12070.1 68416.m01502 geranylgeranyl transferase type II beta... 28 5.9
At3g42880.1 68416.m04495 leucine-rich repeat transmembrane prote... 28 7.8
>At2g37410.2 68415.m04588 mitochondrial import inner membrane
translocase (TIM17) nearly identical to SP|Q9SP35
Mitochondrial import inner membrane translocase subunit
TIM17 {Arabidopsis thaliana}
Length = 243
Score = 128 bits (309), Expect = 4e-30
Identities = 66/153 (43%), Positives = 86/153 (56%)
Frame = +2
Query: 275 EYTREPCPWRILDDSXXXXXXXXXXXXLFHSIKGFRNAPLGFSRKMLGSLAAVKERSPIV 454
E +REPCP RILDD FH IKG N+P G + +G +V +P
Sbjct: 5 ETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGTYNSPKG--SRFVGGTQSVSMNAPRT 62
Query: 455 GGNFAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGVPAMAGSAXXXXXX 634
GG+FAVWGG+FST DC++VY+RQKEDPWNSI++GA TGG L+ R G A + SA
Sbjct: 63 GGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGAGAASRSAIFGGVL 122
Query: 635 XXXXXXXXXMFTRLTAEQFKPQQPIFEDPSILG 733
M ++ A+ PQ + EDP + G
Sbjct: 123 LALIEGAGIMLNKVLAQ---PQNMMMEDPGMQG 152
>At2g37410.1 68415.m04587 mitochondrial import inner membrane
translocase (TIM17) nearly identical to SP|Q9SP35
Mitochondrial import inner membrane translocase subunit
TIM17 {Arabidopsis thaliana}
Length = 243
Score = 128 bits (309), Expect = 4e-30
Identities = 66/153 (43%), Positives = 86/153 (56%)
Frame = +2
Query: 275 EYTREPCPWRILDDSXXXXXXXXXXXXLFHSIKGFRNAPLGFSRKMLGSLAAVKERSPIV 454
E +REPCP RILDD FH IKG N+P G + +G +V +P
Sbjct: 5 ETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGTYNSPKG--SRFVGGTQSVSMNAPRT 62
Query: 455 GGNFAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGVPAMAGSAXXXXXX 634
GG+FAVWGG+FST DC++VY+RQKEDPWNSI++GA TGG L+ R G A + SA
Sbjct: 63 GGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGAGAASRSAIFGGVL 122
Query: 635 XXXXXXXXXMFTRLTAEQFKPQQPIFEDPSILG 733
M ++ A+ PQ + EDP + G
Sbjct: 123 LALIEGAGIMLNKVLAQ---PQNMMMEDPGMQG 152
>At1g20350.1 68414.m02539 mitochondrial import inner membrane
translocase subunit Tim17, putative similar to SP|Q9SP35
Mitochondrial import inner membrane translocase subunit
TIM17 {Arabidopsis thaliana}; contains Pfam profile
PF02466: Mitochondrial import inner membrane translocase
subunit Tim17
Length = 218
Score = 121 bits (292), Expect = 5e-28
Identities = 66/163 (40%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Frame = +2
Query: 275 EYTREPCPWRILDDSXXXXXXXXXXXXLFHSIKGFRNAPLGFSRKMLGSLAAVKERSPIV 454
E +REPCP RILDD +H I+G N+P G ++ G + A++ P
Sbjct: 5 ESSREPCPDRILDDVGGAFAMGAVGGSAYHLIRGIYNSPGG--ARLSGGVQALRMSGPRS 62
Query: 455 GGNFAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGVPAMAGSAXXXXXX 634
GG+F+VWGG++ST DC+LVY RQKEDPWNSI+SGA TGG L+ R G+ A A SA
Sbjct: 63 GGSFSVWGGLYSTFDCALVYARQKEDPWNSILSGAATGGFLSLRQGLGASARSALVGGVL 122
Query: 635 XXXXXXXXXMFTRLTA----EQFKPQQPIFEDPSILGQSQGQA 751
M ++ + EQF P +GQ GQ+
Sbjct: 123 LAMIEGVGIMLNKVQSTAHNEQFMEDHAATSLPYGMGQISGQS 165
>At5g11690.1 68418.m01366 mitochondrial import inner membrane
translocase subunit Tim17, putative similar to SP|Q9SP35
Mitochondrial import inner membrane translocase subunit
TIM17 {Arabidopsis thaliana}; contains Pfam profile
PF02466: Mitochondrial import inner membrane translocase
subunit Tim17
Length = 133
Score = 89.8 bits (213), Expect = 2e-18
Identities = 41/87 (47%), Positives = 61/87 (70%)
Frame = +2
Query: 356 LFHSIKGFRNAPLGFSRKMLGSLAAVKERSPIVGGNFAVWGGMFSTIDCSLVYMRQKEDP 535
++H ++G N+P+G + +G A +P +GG FAV+GG+ ST D +LV +R+KEDP
Sbjct: 32 VYHFVRGAYNSPIG--ARYVGGTQAASMNAPRLGGTFAVFGGLLSTFDYALVRIRKKEDP 89
Query: 536 WNSIMSGALTGGILAARNGVPAMAGSA 616
WNSI++GA TGG+L+ R GV A + SA
Sbjct: 90 WNSIVAGAATGGVLSIRKGVVAASTSA 116
>At3g10110.1 68416.m01211 mitochondrial import inner membrane
translocase subunit Tim17/Tim22/Tim23 family protein
weak similarity to TIM22 preprotein translocase [Rattus
norvegicus] GI:6760457; contains Pfam profile PF02466:
Mitochondrial import inner membrane translocase subunit
Tim17
Length = 173
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +2
Query: 464 FAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGVPA 601
FAV G +FS +C + R K D N+ ++G +TGG ++AR G A
Sbjct: 105 FAVMGLVFSAAECIVEKARAKHDTVNTAIAGCVTGGSMSARGGPKA 150
>At1g18320.1 68414.m02289 mitochondrial import inner membrane
translocase subunit Tim17/Tim22/Tim23 family protein
contains Pfam domain PF02466: Mitochondrial import inner
membrane translocase subunit Tim17
Length = 129
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +2
Query: 464 FAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGVPA 601
FAV G +FS +C + R K D N+ ++G +TGG ++AR G A
Sbjct: 61 FAVMGLVFSAAECIVEKARAKHDTVNTAIAGCVTGGSMSARGGPKA 106
>At1g17530.1 68414.m02155 mitochondrial import inner membrane
translocase subunit Tim17/Tim22/Tim23 family protein
contains Pfam PF02466: Mitochondrial import inner
membrane translocase subunit Tim17
Length = 187
Score = 37.1 bits (82), Expect = 0.013
Identities = 22/84 (26%), Positives = 39/84 (46%)
Frame = +2
Query: 356 LFHSIKGFRNAPLGFSRKMLGSLAAVKERSPIVGGNFAVWGGMFSTIDCSLVYMRQKEDP 535
+F IK F N K+ L + + G + G +++ I+ +V + K+D
Sbjct: 79 IFSGIKSFENGDTT-KLKINRILNSSGQAGRTWGNRVGIVGLIYAGIESGVVAVTDKDDV 137
Query: 536 WNSIMSGALTGGILAARNGVPAMA 607
W S+++G TG + A GV + A
Sbjct: 138 WTSVVAGLGTGAVFRAARGVRSAA 161
>At1g51160.1 68414.m05752 synbindin, putative similar to
Swiss-Prot:Q9ES56 synbindin (TRS23 homolog) [Mus
musculus]
Length = 169
Score = 34.7 bits (76), Expect = 0.068
Identities = 13/44 (29%), Positives = 27/44 (61%)
Frame = -3
Query: 223 FSHYKTSKYTLHCLETPSGLKFVMNTDNQAQGVRDLLMFFHTXF 92
F ++T+ Y L +ETPSG+K ++ T + +R+ L + ++ +
Sbjct: 93 FHSFRTNTYKLSFMETPSGIKIILVTHPKTGDLRESLKYIYSLY 136
>At5g51150.1 68418.m06342 expressed protein similar to unknown
protein (gb|AAD46013.1)
Length = 531
Score = 33.9 bits (74), Expect = 0.12
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +2
Query: 431 VKERSPIVGGNFAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTG-GILA 580
V+E + +G F + G + + C L R+KE P NS+++G++ G ILA
Sbjct: 124 VREEACRIGLLFGGFTGSYHALRCCLRKWRKKETPLNSVLAGSVAGLSILA 174
>At1g12250.1 68414.m01417 thylakoid lumenal protein-related weak
similarity to SP|O22160 Thylakoid lumenal 15 kDa
protein, chloroplast precursor (p15) {Arabidopsis
thaliana}; contains Pfam profile PF00805: Pentapeptide
repeats (8 copies)
Length = 280
Score = 31.1 bits (67), Expect = 0.84
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +2
Query: 524 KEDPWNSIMSGALTGGILAARNGVPAMA 607
+ + W I+S A+ ++A+ +GVPAMA
Sbjct: 63 ESNTWKRILSAAMAAAVIASSSGVPAMA 90
>At5g16080.1 68418.m01879 expressed protein similar to PrMC3 [Pinus
radiata] GI:5487873
Length = 344
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 591 PFLAARIPPVRAPLIMEFHGSSFCL 517
P AA P V PL++ FHG FC+
Sbjct: 81 PDAAAASPSVTLPLLVYFHGGGFCV 105
>At5g55510.1 68418.m06914 mitochondrial import inner membrane
translocase subunit Tim17/Tim22/Tim23 family protein
weak similarity to SP|Q99595 Mitochondrial import inner
membrane translocase subunit TIM17 A {Homo sapiens};
contains Pfam profile PF02466: Mitochondrial import
inner membrane translocase subunit Tim17
Length = 186
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +2
Query: 464 FAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGVPAMAGS 613
FAV G+ S + C L +R K+D N ++G TG L+ AM S
Sbjct: 63 FAVLSGVHSLVVCLLKQIRGKDDAINVGVAGCCTGLALSFPGAPQAMLQS 112
>At3g56030.1 68416.m06225 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 336
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = -3
Query: 268 DILIFKVQTLDPKDGFSHYKTSKYTLHCLETPSGLKFVMNTDNQAQGVRDL 116
D LIFK + + S+ C T + KF+ NTD+ + + DL
Sbjct: 46 DNLIFKAGSSGDFEAVRRLLNSRVVNACFNTTATFKFLTNTDSYSSSLEDL 96
>At4g26670.1 68417.m03842 mitochondrial import inner membrane
translocase subunit Tim17/Tim22/Tim23 family protein
weak similarity to SP|Q9Z0V8 Mitochondrial import inner
membrane translocase subunit TIM17 A {Mus musculus};
contains Pfam profile PF02466: Mitochondrial import
inner membrane translocase subunit Tim17
Length = 210
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 464 FAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTG 568
FAV G+ S + C L +R K+D N ++G TG
Sbjct: 91 FAVLSGVHSLVVCLLKQIRGKDDAINVGVAGCCTG 125
>At3g17850.1 68416.m02275 protein kinase, putative similar to IRE
(incomplete root hair elongation) [Arabidopsis thaliana]
gi|6729346|dbj|BAA89783; contains protein kinase domain
Pfam:PF00069
Length = 1296
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -1
Query: 561 RAPLIMEFHGSSFCLMYTSEQSMVENIPPQTAKLPPTIGERSFTAAKLPS 412
R +++FH S+ Q + K+PP+ RS++AAK+PS
Sbjct: 421 RCTRLLQFHKESWGEEEQVVQLRQSRVLHSIEKIPPSGAGRSYSAAKVPS 470
>At3g12070.2 68416.m01503 geranylgeranyl transferase type II beta
subunit, putative / RAB geranylgeranyltransferase beta
subunit, putative similar to geranylgeranyl transferase
type II beta subunit SP:P53611 [GI:1552549] [Homo
sapiens]
Length = 317
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 421 FGCSKGALSNSRG*FCCLG 477
FGCS GA S++ FCC+G
Sbjct: 170 FGCSPGAESHAGQIFCCVG 188
>At3g12070.1 68416.m01502 geranylgeranyl transferase type II beta
subunit, putative / RAB geranylgeranyltransferase beta
subunit, putative similar to geranylgeranyl transferase
type II beta subunit SP:P53611 [GI:1552549] [Homo
sapiens]
Length = 317
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 421 FGCSKGALSNSRG*FCCLG 477
FGCS GA S++ FCC+G
Sbjct: 170 FGCSPGAESHAGQIFCCVG 188
>At3g42880.1 68416.m04495 leucine-rich repeat transmembrane protein
kinase, putative receptor-like protein kinase PRK1,
Lycopersicon esculentum, PIR:T07865
Length = 633
Score = 27.9 bits (59), Expect = 7.8
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = -2
Query: 557 LHS*WNSMDLPFASCTQVSSLW*RTYHPKQQNYPRLLESAPLLQPN--CQAFF 405
LH + S DLP + + L TY P +Y L PLLQPN QA F
Sbjct: 473 LHEEFASYDLPHGNLKSSNVLLSETYEPLISDYAFL----PLLQPNNASQALF 521
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,890,689
Number of Sequences: 28952
Number of extensions: 370458
Number of successful extensions: 773
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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