Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_K19
         (815 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    65   1e-11
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    46   6e-06
SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    27   3.2  
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1...    25   9.7  
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos...    25   9.7  
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces...    25   9.7  

>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 64.9 bits (151), Expect = 1e-11
 Identities = 26/50 (52%), Positives = 32/50 (64%)
 Frame = +1

Query: 616 LPRWLQDNDYLHKGHRPPLPSFSACFASIFRIHTETGNIWTHLLGCVAFI 765
           L  W QDN Y+  G+RPP  SF  C  SIF +H E+ NIWTHL G + F+
Sbjct: 54  LEPWQQDNQYIISGYRPPSFSFYLCVKSIFHVHNESVNIWTHLFGAIVFL 103


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 46.0 bits (104), Expect = 6e-06
 Identities = 24/56 (42%), Positives = 29/56 (51%)
 Frame = +1

Query: 616 LPRWLQDNDYLHKGHRPPLPSFSACFASIFRIHTETGNIWTHLLGCVAFIGVAIYF 783
           LP    +N Y+ +G+R    S   CF SI   H ET NIWTHL   + F  V  YF
Sbjct: 174 LPVQWHNNPYIIRGYRF-YTSKRKCFRSILSWHNETFNIWTHLSAFIVFFAVLAYF 228


>SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 430 CPLPSTPEDQHLLDAEMAEVLKAGVLSDEIDLGALAHNAA 549
           CPL  TP+ +HL+D ++   +K GV       G L    A
Sbjct: 206 CPL--TPDTEHLVDEKLLASMKKGVKIINTSRGGLVDTKA 243


>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
           Prw1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 373 SPHRDPILACVAIHRRT 323
           SPH +PILA  +  RRT
Sbjct: 334 SPHEEPILASTSADRRT 350


>SPBC18H10.03 |tif35||translation initiation factor
           eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 282

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -3

Query: 348 PASQSIGGHALGSNIRFHFPHLRLFQSREDG 256
           P S    G ALG   R+  PHLR    RE G
Sbjct: 161 PVSSRASG-ALGEKGRYIAPHLRAGSGRESG 190


>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 403

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +1

Query: 316 QSVSSDGLRRRQGW-DPDAESL 378
           Q +  D +RR QGW  PD E+L
Sbjct: 354 QQIKEDEIRRAQGWFFPDKEAL 375


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,422,955
Number of Sequences: 5004
Number of extensions: 71673
Number of successful extensions: 179
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)