Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_K19
(815 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26917| Best HMM Match : No HMM Matches (HMM E-Value=.) 103 2e-22
SB_41241| Best HMM Match : HlyIII (HMM E-Value=1.4) 42 5e-04
SB_25466| Best HMM Match : HlyIII (HMM E-Value=1.6e-22) 40 0.002
SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002) 40 0.003
SB_45751| Best HMM Match : HlyIII (HMM E-Value=0.0006) 38 0.013
SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.052
SB_37780| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.64
SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0) 29 4.5
SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35) 28 7.9
>SB_26917| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 601
Score = 103 bits (246), Expect = 2e-22
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 3/89 (3%)
Frame = +1
Query: 538 HNAAEQAEEFVRKVWEAS---WNVCHFRHLPRWLQDNDYLHKGHRPPLPSFSACFASIFR 708
H A E+AE+ ++V EA W LP WL+DN++L HRPPL SF +CF S+F+
Sbjct: 197 HEAGEKAEKIRKRVIEAGRSGWYTLSHIELPHWLRDNEFLEDSHRPPLNSFKSCFKSMFK 256
Query: 709 IHTETGNIWTHLLGCVAFIGVAIYFXSRP 795
IHTETGNIWTH +G +AFI +Y RP
Sbjct: 257 IHTETGNIWTHFIGFLAFIAAMLYMYIRP 285
>SB_41241| Best HMM Match : HlyIII (HMM E-Value=1.4)
Length = 242
Score = 42.3 bits (95), Expect = 5e-04
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 643 YLHKGHRPPLPSFSACFASIFRIHTETGNIWTHLLGCVAFI 765
Y+H +R P S C S+F+ H ET NIW+H + F+
Sbjct: 52 YIHTRYRRPCLSVEQCIESMFQPHNETVNIWSHFIAAFVFL 92
>SB_25466| Best HMM Match : HlyIII (HMM E-Value=1.6e-22)
Length = 382
Score = 40.3 bits (90), Expect = 0.002
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 643 YLHKGHRPPLP-SFSACFASIFRIHTETGNIWTHLLGCVAFIGVAIYF 783
++ G+R P S C + F +H ET NIW+HL +AFI A+YF
Sbjct: 54 FILSGYRNPGNFSLRQCLVTAFSLHNETINIWSHL---IAFIAFAVYF 98
>SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002)
Length = 458
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/67 (29%), Positives = 34/67 (50%)
Frame = +1
Query: 541 NAAEQAEEFVRKVWEASWNVCHFRHLPRWLQDNDYLHKGHRPPLPSFSACFASIFRIHTE 720
+A E+ EE + +C + P WLQ N ++ G+R + S C S+ +H E
Sbjct: 307 HALEKDEETKENTCDLPPKLCSLQCCPSWLQFNKFVLTGYRCDY-TVSECLDSLLYVHNE 365
Query: 721 TGNIWTH 741
+ NI++H
Sbjct: 366 SVNIYSH 372
>SB_45751| Best HMM Match : HlyIII (HMM E-Value=0.0006)
Length = 198
Score = 37.5 bits (83), Expect = 0.013
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 643 YLHKGHRPPLPSFSACFASIFRIHTETGNIWTHLLGCVAFI 765
++ G+R P + CF S+ ET N+WTH+L V F+
Sbjct: 43 FIKTGYRKPGLTMWGCFKSLIEPTNETVNVWTHVLALVLFL 83
>SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 35.5 bits (78), Expect = 0.052
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +1
Query: 595 NVCHFRHLPRWLQDNDYLHKGHRP-PLPSFSACFASIFRIHTETGNIWTHLLGCVAFIGV 771
N H + +P +D + G+R S C ++F H E +IW+HLL +AFI
Sbjct: 724 NTLHAKDVPLEARD-PHTMTGYRSFGTLSVRDCIRTMFSSHNEIVDIWSHLLPALAFIAY 782
Query: 772 AIY 780
IY
Sbjct: 783 FIY 785
>SB_37780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 164
Score = 31.9 bits (69), Expect = 0.64
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +2
Query: 614 ICHVGCKTTIIYTKDIDRLYLRLAHVLHQFSES-TLRQVTFGRISLAAWHSLASRSTFXL 790
+C++ C++ ++Y DR + V+ E+ TL+ ++ I A L SR+++ L
Sbjct: 14 LCNINCRSRVLYESIKDRCECQTEDVIDLADETGTLKNLSDRPIQQYALEYLTSRASYIL 73
Query: 791 VHLSKS 808
+ + KS
Sbjct: 74 MKVKKS 79
>SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 1283
Score = 29.1 bits (62), Expect = 4.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 296 WNLILDPKACPPMDCDAGKDGIP 364
WN +L+P P DCD +G+P
Sbjct: 749 WNDVLNPLLAEPPDCDPTYEGLP 771
>SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -2
Query: 529 LPNQSHRITRQLSKLQP-FRHPTDVDPPVLKAAD 431
L ++ H+ + + K+ P F+ P D PP++K D
Sbjct: 70 LEDERHKFIQDMMKINPDFKPPADYKPPLIKIQD 103
>SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)
Length = 2748
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +2
Query: 503 CYPMRLIWEHWPITPPNRPKNSFAKYGRRRGTCAISDICHVGCKTTIIYT 652
C P+R+ WEH ++ + + R G AI + C + I+ T
Sbjct: 444 CRPLRICWEHRFLSSVSHTVLKYCLIDRETGRFAIPSRQDIDCVSVIVTT 493
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,968,383
Number of Sequences: 59808
Number of extensions: 542856
Number of successful extensions: 2078
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2076
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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