Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_K19
(815 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g38320.1 68417.m05416 expressed protein contains Pfam domain,... 61 7e-10
At4g37680.1 68417.m05329 expressed protein contains Pfam domain,... 60 2e-09
At4g30850.2 68417.m04378 expressed protein contains Pfam domain,... 51 1e-06
At4g30850.1 68417.m04377 expressed protein contains Pfam domain,... 51 1e-06
At2g24150.1 68415.m02885 expressed protein contains Pfam profile... 50 2e-06
At5g20270.1 68418.m02413 expressed protein contains Pfam domain,... 48 7e-06
At5g24530.1 68418.m02897 oxidoreductase, 2OG-Fe(II) oxygenase fa... 31 1.2
At3g53360.1 68416.m05889 pentatricopeptide (PPR) repeat-containi... 30 1.6
At1g10760.1 68414.m01231 starch excess protein (SEX1) identical ... 30 1.6
At2g14500.1 68415.m01623 F-box family protein contains F-box dom... 30 2.1
At1g64920.1 68414.m07359 glycosyltransferase family protein cont... 28 6.4
At4g10490.1 68417.m01721 oxidoreductase, 2OG-Fe(II) oxygenase fa... 28 8.5
>At4g38320.1 68417.m05416 expressed protein contains Pfam domain,
PF03006: Uncharacterised protein family (Hly-III /
UPF0073)
Length = 374
Score = 61.3 bits (142), Expect = 7e-10
Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Frame = +1
Query: 469 DAEMAEVLKAGVLSDEIDLGALAHNAAEQAEEFVRKVWE-ASWNVCHFRHLPRWLQDNDY 645
+AE+ E LK S+ ID HN +++W+ + + F LP +L+DN+Y
Sbjct: 4 EAEIKEHLKPQASSETIDK---KHNVKG------KRLWQKVKYQLVEFHSLPAYLRDNEY 54
Query: 646 LHKGHRPPLPSFSACFASIFRIHTETGNIWTHLLGCVAFIGVAIYFXSR-PSI 801
+ +R P SIF IH ET N+WTHL+G F+ + IY ++ PS+
Sbjct: 55 IIGHYRSEWP-IKQILLSIFTIHNETLNVWTHLIGFFLFLALTIYTATKVPSV 106
>At4g37680.1 68417.m05329 expressed protein contains Pfam domain,
PF03006: Uncharacterised protein family (Hly-III /
UPF0073)
Length = 385
Score = 60.1 bits (139), Expect = 2e-09
Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Frame = +1
Query: 469 DAEMAEVLKAGVLSDEIDLGALAHNAAEQAEEFVRKVWE-ASWNVCHFRHLPRWLQDNDY 645
+AE+ E LK S+ +D HN +++W+ + + F LP +L+DN+Y
Sbjct: 4 EAEIKEHLKPQASSETMDK---KHNVKG------KRLWQKVKYQLVEFHSLPAYLRDNEY 54
Query: 646 LHKGHRPPLPSFSACFASIFRIHTETGNIWTHLLGCVAFIGVAIYFXSR-PSI 801
+ +R P SIF IH ET N+WTHL+G F+ + IY ++ PS+
Sbjct: 55 IIGHYRSEWP-IKQILLSIFTIHNETLNVWTHLIGFFLFLALTIYTATKVPSV 106
>At4g30850.2 68417.m04378 expressed protein contains Pfam domain,
PF03006: Uncharacterised protein family (Hly-III /
UPF0073)
Length = 358
Score = 50.8 bits (116), Expect = 1e-06
Identities = 24/52 (46%), Positives = 30/52 (57%)
Frame = +1
Query: 607 FRHLPRWLQDNDYLHKGHRPPLPSFSACFASIFRIHTETGNIWTHLLGCVAF 762
F LPR+L+DN+++H +R S F S F H ET NIWTHL G F
Sbjct: 34 FEELPRYLKDNEFIHNHYRCEW-SIKETFLSAFSWHNETLNIWTHLCGFAIF 84
>At4g30850.1 68417.m04377 expressed protein contains Pfam domain,
PF03006: Uncharacterised protein family (Hly-III /
UPF0073)
Length = 358
Score = 50.8 bits (116), Expect = 1e-06
Identities = 24/52 (46%), Positives = 30/52 (57%)
Frame = +1
Query: 607 FRHLPRWLQDNDYLHKGHRPPLPSFSACFASIFRIHTETGNIWTHLLGCVAF 762
F LPR+L+DN+++H +R S F S F H ET NIWTHL G F
Sbjct: 34 FEELPRYLKDNEFIHNHYRCEW-SIKETFLSAFSWHNETLNIWTHLCGFAIF 84
>At2g24150.1 68415.m02885 expressed protein contains Pfam profile
PF03006: Uncharacterised protein family (Hly-III /
UPF0073)
Length = 344
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/57 (40%), Positives = 33/57 (57%)
Frame = +1
Query: 607 FRHLPRWLQDNDYLHKGHRPPLPSFSACFASIFRIHTETGNIWTHLLGCVAFIGVAI 777
F LP +L+DN+++H +R S F S F H ET NIWTHL+G F+ + +
Sbjct: 37 FEDLPEYLKDNEFIHNHYRCQW-SLKDTFLSAFSWHNETLNIWTHLIGFGIFLWMTV 92
>At5g20270.1 68418.m02413 expressed protein contains Pfam domain,
PF03006: Uncharacterised protein family (Hly-III /
UPF0073)
Length = 332
Score = 48.0 bits (109), Expect = 7e-06
Identities = 19/54 (35%), Positives = 33/54 (61%)
Frame = +1
Query: 616 LPRWLQDNDYLHKGHRPPLPSFSACFASIFRIHTETGNIWTHLLGCVAFIGVAI 777
LP +++DN+Y+ +R S F S+F H E+ N+WTHL+G + F+ + +
Sbjct: 62 LPEYMKDNEYILNYYRADW-SIRDAFFSVFSFHNESLNVWTHLIGFIFFVALTV 114
>At5g24530.1 68418.m02897 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to flavanone 3-hydroxylase
[Persea americana][GI:727410]; contains PF03171
2OG-Fe(II) oxygenase superfamily domain
Length = 341
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 479 WLKF*KLACYPMRLIWEHWPITPPNRPKNSFAKYGR 586
W + +L CYP+ WP PP+ K +KY R
Sbjct: 123 WRDYLRLHCYPIHKYVNEWPSNPPSF-KEIVSKYSR 157
>At3g53360.1 68416.m05889 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 768
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 314 DPISDSTSHIFACFNHAKMGNWQPLA 237
DP + ST+H+ C HA GNW+ A
Sbjct: 672 DPFN-STAHVLLCSMHASSGNWENAA 696
>At1g10760.1 68414.m01231 starch excess protein (SEX1) identical to
SEX1 [Arabidopsis thaliana] GI:12044358; supporting cDNA
gi|12044357|gb|AF312027.1|AF312027
Length = 1399
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 475 EMAEVLKAGVLSDEIDL-GALAHNAAEQAEEFVRKVWEASWNVCHFRHLPRWLQDNDYL 648
E+ E LK+ + S ++ G EQA ++KVW + WN + + D+DYL
Sbjct: 1170 ELVEELKSTMKSSDMPWPGDEGEQRWEQAWAAIKKVWASKWNERAYFSTRKVKLDHDYL 1228
>At2g14500.1 68415.m01623 F-box family protein contains F-box domain
Pfam:PF00646
Length = 347
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1
Query: 362 GSHPCLRRNPSEDTLWDPISDSTSHIFACFNHAKMGNW 249
G H C+ NP ED ++ + D + IF A GNW
Sbjct: 58 GVHGCVLYNPDEDRIYKSVRDFSGTIFL----ANSGNW 91
>At1g64920.1 68414.m07359 glycosyltransferase family protein
contains Pfam profile: PF00201 UDP-glucoronosyl and
UDP-glucosyl transferase
Length = 452
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/37 (27%), Positives = 23/37 (62%)
Frame = -2
Query: 730 CYLSQCGFGKLMQNMR*TKVEAVYVLCVNNRCLAANV 620
C++S CGFG + +++ + + V++ +N++ L V
Sbjct: 336 CFVSHCGFGSMWESLM-SDCQIVFIPVLNDQVLTTRV 371
>At4g10490.1 68417.m01721 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to naringenin,2-oxoglutarate
3-dioxygenase [Dianthus caryophyllus][SP|Q05964],
hyoscyamine 6 beta-hydroxylase [Atropa
belladonna][gi:4996123]; contains PF03171 2OG-Fe(II)
oxygenase superfamily domain
Length = 348
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +2
Query: 479 WLKF*KLACYPMRLIWEHWPITP 547
W F +L CYP+ WP TP
Sbjct: 130 WRDFLRLHCYPIEDFINEWPSTP 152
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,041,468
Number of Sequences: 28952
Number of extensions: 380589
Number of successful extensions: 941
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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