Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_K17
         (414 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27103| Best HMM Match : Lipoprotein_3 (HMM E-Value=10)              29   2.0  
SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.5  
SB_6177| Best HMM Match : PDE6_gamma (HMM E-Value=1.6)                 27   6.1  
SB_11370| Best HMM Match : Fibrinogen_C (HMM E-Value=3.7)              27   6.1  
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  

>SB_27103| Best HMM Match : Lipoprotein_3 (HMM E-Value=10)
          Length = 476

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = -1

Query: 117 WPSISSGSTSQR---IHRRRSAFYMYVHTVHGIDRCESIGRP 1
           W  ++ G  S R   IHRR    +++      IDRC+ I  P
Sbjct: 62  WRDLAQGKRSSRGDYIHRRLDYLFLFDDLQSSIDRCDIIPAP 103


>SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2353

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 123 GCWPSISSGSTSQRIHRRRSAFYMYVHT 40
           G W +  + S   R+H+RR+A ++Y  T
Sbjct: 337 GIWHTRRTSSRGIRLHKRRNAMFVYAKT 364


>SB_6177| Best HMM Match : PDE6_gamma (HMM E-Value=1.6)
          Length = 642

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 17/71 (23%), Positives = 27/71 (38%)
 Frame = +3

Query: 12  CFRICQFRVPCGRTYKMQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATG 191
           CF    FR      + + +   EFV   C  + S   R + +     ++L   D D A  
Sbjct: 291 CFHGVNFRAQSWVLFSLSSPYMEFVSKVCSEEKSCQVRRVRSVQQLMIRLGNGDEDQAGT 350

Query: 192 RAADTSKMYVV 224
            +   + M VV
Sbjct: 351 HSPTATNMAVV 361


>SB_11370| Best HMM Match : Fibrinogen_C (HMM E-Value=3.7)
          Length = 120

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +3

Query: 3   AGRCFRICQFRVPCGRTYKMQNDAGEFVDLYCPRKCSASNRLIHAKDHA 149
           A  C  + +  V     YK++ D GE + +YC ++ S     I   +HA
Sbjct: 17  AKSCRELLELGVTTSGIYKIRPDDGEPITVYCDQEGSRGGWEIRHVNHA 65


>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1211

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -3

Query: 289 PSFFVNLTMQSSDSPILRIAPQTTYILDVSAARPVAGSTSAIT 161
           P   V ++ Q   +P + +AP+TT + + + A      T   T
Sbjct: 396 PEISVTISTQPKKAPGITVAPETTVVPETTVASETTAETHQTT 438


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,331,166
Number of Sequences: 59808
Number of extensions: 210760
Number of successful extensions: 649
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 764823134
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)