Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_K17
         (414 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53890.1 68416.m05953 40S ribosomal protein S21 (RPS21B) ribo...    78   2e-15
At5g27700.1 68418.m03322 40S ribosomal protein S21 (RPS21C) ribo...    77   6e-15
At3g04890.1 68416.m00531 expressed protein                             28   2.9  
At1g48090.1 68414.m05362 C2 domain-containing protein contains P...    27   5.0  
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P...    26   8.7  
At1g73000.1 68414.m08442 hypothetical protein                          26   8.7  

>At3g53890.1 68416.m05953 40S ribosomal protein S21 (RPS21B)
           ribosomal protein S21, cytosolic - Oryza sativa,
           PIR:S38357
          Length = 82

 Score = 78.2 bits (184), Expect = 2e-15
 Identities = 38/81 (46%), Positives = 53/81 (65%)
 Frame = +3

Query: 60  MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIR 239
           M+NDAG+  +LY PRKCSA+NR+I +KDHASVQL I  +D A G        + +CG +R
Sbjct: 1   MENDAGQVTELYIPRKCSATNRMITSKDHASVQLNIGHLD-ANGLYTGQFTTFALCGFVR 59

Query: 240 RMGESDDCIVRLTKKDGILAK 302
             G++D  + RL +K  + AK
Sbjct: 60  AQGDADSGVDRLWQKKKVEAK 80


>At5g27700.1 68418.m03322 40S ribosomal protein S21 (RPS21C)
           ribosomal protein S21, Zea mays, PIR:T03945
          Length = 85

 Score = 76.6 bits (180), Expect = 6e-15
 Identities = 38/81 (46%), Positives = 52/81 (64%)
 Frame = +3

Query: 60  MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIR 239
           MQN+ G+  +LY PRKCSA+NRLI +KDHASVQL I  +D A G        + +CG +R
Sbjct: 1   MQNEEGQVTELYIPRKCSATNRLITSKDHASVQLNIGHLD-ANGLYTGQFTTFALCGFVR 59

Query: 240 RMGESDDCIVRLTKKDGILAK 302
             G++D  + RL +K  + AK
Sbjct: 60  AQGDADSGVDRLWQKKKVEAK 80


>At3g04890.1 68416.m00531 expressed protein
          Length = 216

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +3

Query: 114 ASNRLIHAKDHASVQLVIADVDPATG-RAADTSKMYVVCGAIRRMGESDDCI 266
           +S  +   KD +  ++   DVD   G   +D    Y V G +     SDDCI
Sbjct: 57  SSTSIATNKDRSKNEVTAGDVDDVMGILRSDYRNFYFVTGVLTSAIYSDDCI 108


>At1g48090.1 68414.m05362 C2 domain-containing protein contains Pfam
            profile: PF00168 C2 domain
          Length = 4144

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -3

Query: 160  SCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCILYV--RPH 41
            +C+  W + W   +  E   G+    NSP S  ILY+  +PH
Sbjct: 4019 ACSIQWDILWNDLVTMELSDGKKDPPNSPPSRLILYLKAKPH 4060


>At3g18190.1 68416.m02314 chaperonin, putative similar to
           SWISS-PROT:P50991- T-complex protein 1, delta subunit
           (TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 536

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 226 QTTYILDVSAARPVAGSTSAITSCTE 149
           Q T IL+ +  +P+  STSAIT  TE
Sbjct: 496 QITNILEENVVQPLLVSTSAITLATE 521


>At1g73000.1 68414.m08442 hypothetical protein
          Length = 209

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 19/76 (25%), Positives = 31/76 (40%)
 Frame = -3

Query: 283 FFVNLTMQSSDSPILRIAPQTTYILDVSAARPVAGSTSAITSCTEAWSLAWMRRLLAEHF 104
           F  + T++ + + I  I   T   + V +  P + S   +    E   +   R L  EH 
Sbjct: 81  FIKSCTIRVNGNGIKEIKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHR 140

Query: 103 LGQYKSTNSPASFCIL 56
           L  Y+S  S   F +L
Sbjct: 141 LNNYRSVTSVNEFVVL 156


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,589,356
Number of Sequences: 28952
Number of extensions: 138631
Number of successful extensions: 343
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)