Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_K15
         (811 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    23   3.8  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    22   6.6  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    21   8.8  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   8.8  

>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
          protein.
          Length = 203

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 18 LKVCLRRRPGTARGCPPR 71
          L +C+R+RP +    PPR
Sbjct: 15 LDLCVRKRPHSPEPYPPR 32


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 285 RQTHPREGGRIRKHTQEPPA 344
           R THP E GR  K     PA
Sbjct: 351 RTTHPNEPGRFAKLLLRLPA 370


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/42 (21%), Positives = 20/42 (47%)
 Frame = +2

Query: 11  VPPQGVPTKKARNSSRLSAARTRTLPTKSRTSWTRSAKVAAT 136
           +PP+ VPT + + +    +  T+     + +S T+  +   T
Sbjct: 391 IPPEPVPTPEPQPTQTTESEPTQASEQPTESSTTQKPQTTKT 432


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 415 KKLEADINELEIALDHANKANAEAQKNIKRYQAQIKDL 528
           KK E    E+E   DH  K N  ++K  + Y   + D+
Sbjct: 213 KKKEVK-EEIEDEPDHKWKKNDSSKKKTRYYYRSVDDV 249


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.309    0.126    0.326 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,828
Number of Sequences: 336
Number of extensions: 1995
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22102797
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)