Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_K14
         (364 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    22   2.2  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    22   2.2  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    20   6.8  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    20   6.8  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    20   6.8  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    20   6.8  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    20   6.8  

>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 135 LGQVKTTIHTMFFRLSMKC 79
           LG+V    +T++FR+  KC
Sbjct: 323 LGRVPIWPYTLYFRMPHKC 341


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 135 LGQVKTTIHTMFFRLSMKC 79
           LG+V    +T++FR+  KC
Sbjct: 330 LGRVPIWPYTLYFRMPHKC 348


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 63  NKSTKNQNIHFERKHKQQ 10
           N+   NQ    +RKH QQ
Sbjct: 286 NQYQMNQEYRTDRKHTQQ 303


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 5/20 (25%), Positives = 13/20 (65%)
 Frame = +3

Query: 30  QNGCFDFSSIYFTFINNISY 89
           Q+G  + + + F F+ N+++
Sbjct: 440 QDGVMNINGVLFVFLTNMTF 459


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 5/20 (25%), Positives = 13/20 (65%)
 Frame = +3

Query: 30  QNGCFDFSSIYFTFINNISY 89
           Q+G  + + + F F+ N+++
Sbjct: 440 QDGVMNINGVLFVFLTNMTF 459


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 63  NKSTKNQNIHFERKHKQQ 10
           N+   NQ    +RKH QQ
Sbjct: 234 NQYQMNQEYRTDRKHTQQ 251


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 63  NKSTKNQNIHFERKHKQQ 10
           N+   NQ    +RKH QQ
Sbjct: 417 NQYQMNQEYRTDRKHTQQ 434


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,879
Number of Sequences: 336
Number of extensions: 729
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7404950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)